PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01140
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 403aa    MW: 43797.8 Da    PI: 5.6669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01140genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-19319353135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Ro01_G01140 319 CSHCGVQKTPQWRTGPNGAKTLCNACGVRYKSGRL 353
                  *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MLYQTHHPSF LFQFHPPPPF TCSTSTPCPS SSATITTTTS LSCSPPPSFP QVETSEMECV  60
EAALKTSIRK EMAVKASPQA VFEDLWGLNG QSGVQNCEDF SVDDLLDFSN DDGFVEQEDD  120
EAPQAQALAL AQAVEEDEED DKGSVLAHKV SQEEKEISTP CSCLSDKNEL GPEPTSELSV  180
PADDLENLEW LSHFVEDSFS GFNTSLPVGF LAVKPKNQTE KRPEPEALKP CFKTPVPAKA  240
RSKRTRTGGR VWSLGSPSFT ESSSSSSSSS STSSCPSSPW LIYNTTQGPG VFGSSVEKPQ  300
KKPKRPAAEG GSSQPPRRCS HCGVQKTPQW RTGPNGAKTL CNACGVRYKS GRLVPEYRPA  360
CSPTFSSELH SNHHRKVMEI RRKKEVPPVS EPGLVTTPVV RSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-72GATA family protein