PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01137
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 262aa    MW: 30095.8 Da    PI: 8.8654
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01137genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+ sst+k++ey+s
  Ro01_G01137  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAQVSLIMQSSTDKIHEYIS 59
                 569**********************************************86 PP
2K-box80.93e-2771168198
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yqk+ + +l+++++e ++++l kLk+ +++L+r +R++lG dL+ L++ eL+ Le+++ +sl+ iR++K++++++q+++++k+ k+l+e+n +L + +
  Ro01_G01137  71 YQKNLQIDLWSSHYEAMKENLWKLKEVNNKLRRDIRQRLGHDLNGLTIVELRDLEEKMARSLEIIRDRKYHVIKTQTDTTKKRVKNLEERNSNLMHGY 168
                  78888899**************************************************************************************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AQVSLIMQSS TDKIHEYISP  60
TTTTKKMLDL YQKNLQIDLW SSHYEAMKEN LWKLKEVNNK LRRDIRQRLG HDLNGLTIVE  120
LRDLEEKMAR SLEIIRDRKY HVIKTQTDTT KKRVKNLEER NSNLMHGYEA ALEDPQYGYV  180
DNEGDFESAV ALANGASNLY FFNNRVHNNH NHNHNLDHGH GGGSLVSSIT QLHNPDNHNL  240
DNGNGGGSLM SSITHLHDLR LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-72MIKC_MADS family protein