PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G00989

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 296aa MW: 33626.2 Da PI: 8.0811

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G00989	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	57	111	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Ro01_G00989 57 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 111 45699************************************************95 PP
2	HD-ZIP_I/II	114.2	7.8e-37	57	139	2	84
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e+++Le+ev Ro01_G00989 57 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHENVVVEKCKLESEV 139 9*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MTTTTANINH PVDQDHMLLI SQLYPDVYTQ IVPQQATKPR RRRKKSKSGE SGGAGAKKRK 60 LTEEQVTLLE LNFGNEHKLE SEKKDRLASE LGLDPRQVAV WFQNRRARWK NKKLEEEYST 120 LKKAHENVVV EKCKLESEVH ISILPSLSVW MSHLLNMQKL KEQLSLSEKE IQRLSERAEG 180 GGSSNSPSPS LSMEANIDPP FFGEFGVEYD GVFYMPQNNS INGMEWMNLD NLADKIRHTR 240 TSYYILCTLM SVEEYTCTKA IGGLEDRSIL LSTKSINATR DDSFFGQLGA LVIKQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	59	RRRRKKSKSGESGGAGAKKR
2	40	60	RRRRKKSKSGESGGAGAKKRK
3	41	60	RRRRKKSKSGESGGAGAKKR
4	41	61	RRRRKKSKSGESGGAGAKKRK
5	42	62	RRRRKKSKSGESGGAGAKKRK
6	43	63	RRRRKKSKSGESGGAGAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-67	HD-ZIP family protein