PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G00882 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 28212.3 Da PI: 10.4232 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 34 | 80 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qky Ro01_G00882 34 RVPWTEEEHRTFLMGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKY 80 789*******************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MGRKCSHCGN IGHNSRTCTN FRGTSTTGFA GTTRVPWTEE EHRTFLMGLE KLGKGDWRGI 60 SRNYVTTRTP TQVASHAQKY FLRQATLTKK KRRSSLFDMF GSSSNNTQSK PSSIDPAPTQ 120 CFNINPTSPH QHNIQLQLST STTSAAQNLK PSDNQQKPAD YSSTPPPLGN SHHHDRARDH 180 AMPVWIYGLI DSQLKYSNAA SSSKPSTSNI PSSSVVPDHL ELTLAAPVRP INLEQNRSSS 240 SSSSPTGGPL LNIGPISVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 2e-39 | MYB_related family protein |