PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G00847
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 399aa    MW: 43796.1 Da    PI: 6.5696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G00847genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08136157426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++f++ G+Ck Gd+C FaHg
  Ro01_G00847 136 SACPDFRK-GHCKKGDSCEFAHG 157
                  67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    
MMLGEPHRPN PTIHVPPWLS LDDPTAEMYS PYPLSGVSVS SDGNANSPYH LNEALATLQC  60
YLPSNEISDP DSDSEFSGLD LDSPVDAYSC DHFRMFEFKV RRCARGRSHD WTDCPFAHPG  120
EKARRRDPRK FHYSGSACPD FRKGHCKKGD SCEFAHGVFE CWLHPARYRT QPCKDGTSCK  180
RRVCFFAHTP EQLRVLPQQS PRGSTSAESY DGSPLRQAIE AASCVKGLPF LSTPPSISPE  240
DSPPVSPMTR SVSRSLGSSS MNEMVASLRN LQLGKVKSLP TSWNVQVGSP GGFVSPRGSM  300
LRPGFCSLPS TPTRIPARSA IACLDLCDEG CEEEPPMERV ESGRDLRAKM FEKLREENSL  360
ERVDPTQASG APDVGWISEL GQGGVASETA SYSRLAFTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-130C3H family protein