PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000432.1_g000005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 43586.3 Da PI: 5.2747 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.4 | 3e-08 | 18 | 58 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + + +C+ ++ +lC dC ++H H+ Rmu_ssc0000432.1_g000005.1 18 RVCDTCRSAPCTVYCRADSAYLCSDCDATIHAAnrvasrHE 58 79*****************************5556666676 PP | |||||||
2 | zf-B_box | 29.5 | 1.6e-09 | 60 | 105 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H++vp+ Rmu_ssc0000432.1_g000005.1 60 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105 689*****************************66899999**9997 PP | |||||||
3 | CCT | 70.3 | 5e-24 | 327 | 370 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Rmu_ssc0000432.1_g000005.1 327 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 370 9*****************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence |
MLLKEESNGA AAANSWARVC DTCRSAPCTV YCRADSAYLC SDCDATIHAA NRVASRHERV 60 WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG FLHGPTATDP 120 GGQIMVGAAP ADTTEDGFLS QEGDEAMDEE DEDEAASWLL LNPVKNSNGN HNSNNNPNNN 180 NNGFFFGVEV DEYLDFVEYN SSDQNQLSTT TASTDQHNQY GVPHKISYGG DSVVPVQYGE 240 GKVNQMQMQQ KHNFHQLGME YESSKAAYGY DGSISHTVSV SSMDVGVVPD STMSDMSISH 300 PRTPKGTIDL FNGPTIQMPT QLSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP 360 RIKGRFAKRT DIEVEVDQMF STSLMGETGY GIVPSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-126 | CO-like family protein |