PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000411.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 344aa    MW: 38404.1 Da    PI: 6.5749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000411.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24162263199
                                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                 f+k+lt sd++++g +++ +++a+e+      +  ++ +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +g
  Rmu_ssc0000411.1_g000001.1 162 FCKTLTASDTSTHGGFSVLRRHADEClpqldmS-RQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAG 243
                                 99****************************963.3334459****************************************** PP

                                 -EEEEEE-SSSEE..EEEEE-S CS
                          B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                 D ++F   + +++el+v+v+r+
  Rmu_ssc0000411.1_g000001.1 244 DAFIFL--RGENGELRVGVRRA 263
                                 ******..449999*****996 PP
2Auxin_resp73.65.4e-25288343156
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse 56 
                                 a+ha+ t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e
  Rmu_ssc0000411.1_g000001.1 288 AWHAIMTGTMFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE 343
                                 79***************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MTSSEVSIKD NGGNQRGGES FSSGFSDHND GRNNAAEGQN GHSTVPAAGR DAETALYTEL  60
WHACAGPLVT VPREGERVFY FPQGHIEQVE ASTNQVAEQQ MPVYNLPPKI LCKVINVQLK  120
AEPDTDEVFA QVTLLPEPTQ DENAVEKEPP PPPPPRFQVH SFCKTLTASD TSTHGGFSVL  180
RRHADECLPQ LDMSRQPPTQ ELVAKDLHGN EWRFRHIFRG QPRRHLLQSG WSVFVSSKRL  240
VAGDAFIFLR GENGELRVGV RRAMRQQGNV PSSVISSHSM HLGVLATAWH AIMTGTMFTV  300
YYKPRTSPAE FIVPFDQYME SVKNNYSIGM RFKMRFEGEE APEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein