PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000400.1_g000101.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 829aa MW: 96251.5 Da PI: 7.5993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000400.1_g000101.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.3e-16	97	220	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................................t 48 kfY+ Y+ GFsvrk+k k+ r g +++r++vCsk+gkr+ k++ + Rmu_ssc0000400.1_g000101.1 97 KFYSYYSLAKGFSVRKQKLDKN-RAGLVIRRQLVCSKQGKRRAPKDTishqqgskgkqdncqlssigncqqnstnisgqnphK 178 6*****************99.7778************9999***************************99988 PP FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++ +tr tr++C a+++v+ + + +++ +++ +eHnH+l Rmu_ssc0000400.1_g000101.1 179 KQCTETRRATRVNCPASFVVRFCTkRRVYYASEFITEHNHAL 220 88889************999899***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
MSGLDLENTI FTIGEVRFEM EESGLRYTDQ QYYNSGMDPN AEEGSSTDNS DEEIEYTNLM 60 EEAEMQDCTR YRGKLYKDLK LEDLKEVEFN SIEEVDKFYS YYSLAKGFSV RKQKLDKNRA 120 GLVIRRQLVC SKQGKRRAPK DTISHQQGSK GKQDNCQLSS IGNCQQNSTN ISGQNPHKKQ 180 CTETRRATRV NCPASFVVRF CTKRRVYYAS EFITEHNHAL GRPEHRQFRR SHLRDRNLAQ 240 LNASRKVLVR TCHAYEFLVH QAGGYEFVGL YNKPQGERKE VVMDGDAQSL VTWMNFKAMR 300 DPHFYCIFSV DKEGRLANVF WRDGQSLTDY NAFGEVLIFD SSEKCNMYGK PLAVFVGCNN 360 HRATVLFGYA LLVDETKETY DWVITCFLTS MRGKKPISVI TNSDDAICNV VTNLIPRARH 420 RLCAWHVGKN VCQHLKDVDT QRHFFHLIFA GLTIEEWELA WQYFVAMNRL ENNEWVTSMY 480 NKRERWAEAF FRDHFFGGIC STQRCDRMHR NLEEGIDRYM RLYEVLPRME KTIERIRNQV 540 LQDDYQSQNY DPVYGSHMRC LQEEIGKRFT HDIFLLIKEQ INFESKFVIG PRSIHPKTGA 600 SLISLMQYGK PERRWIVSYQ PDESNPTLVC SCKLFESDGI PCCHIFAVMK FEMLTTFPES 660 LVNKRWTKEA TVKTAISSSG LVSNMSVQIA RYGELMAQCA KICHIASYSE EGYNEIREAL 720 SQLTIRSQKY SSESEFENGP FPMCDHLCVH QTPRTTNLLI PVHGHEIVRR FADGAMPCFF 780 NNFSWLLQIQ VYAVIHFPGD RKLFGHLHIM PKTSFTLEHG IELVVVLVE

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

MSGLDLENTI FTIGEVRFEM EESGLRYTDQ QYYNSGMDPN AEEGSSTDNS DEEIEYTNLM  60
EEAEMQDCTR YRGKLYKDLK LEDLKEVEFN SIEEVDKFYS YYSLAKGFSV RKQKLDKNRA  120
GLVIRRQLVC SKQGKRRAPK DTISHQQGSK GKQDNCQLSS IGNCQQNSTN ISGQNPHKKQ  180
CTETRRATRV NCPASFVVRF CTKRRVYYAS EFITEHNHAL GRPEHRQFRR SHLRDRNLAQ  240
LNASRKVLVR TCHAYEFLVH QAGGYEFVGL YNKPQGERKE VVMDGDAQSL VTWMNFKAMR  300
DPHFYCIFSV DKEGRLANVF WRDGQSLTDY NAFGEVLIFD SSEKCNMYGK PLAVFVGCNN  360
HRATVLFGYA LLVDETKETY DWVITCFLTS MRGKKPISVI TNSDDAICNV VTNLIPRARH  420
RLCAWHVGKN VCQHLKDVDT QRHFFHLIFA GLTIEEWELA WQYFVAMNRL ENNEWVTSMY  480
NKRERWAEAF FRDHFFGGIC STQRCDRMHR NLEEGIDRYM RLYEVLPRME KTIERIRNQV  540
LQDDYQSQNY DPVYGSHMRC LQEEIGKRFT HDIFLLIKEQ INFESKFVIG PRSIHPKTGA  600
SLISLMQYGK PERRWIVSYQ PDESNPTLVC SCKLFESDGI PCCHIFAVMK FEMLTTFPES  660
LVNKRWTKEA TVKTAISSSG LVSNMSVQIA RYGELMAQCA KICHIASYSE EGYNEIREAL  720
SQLTIRSQKY SSESEFENGP FPMCDHLCVH QTPRTTNLLI PVHGHEIVRR FADGAMPCFF  780
NNFSWLLQIQ VYAVIHFPGD RKLFGHLHIM PKTSFTLEHG IELVVVLVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-65	FAR1 family protein