PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000386.1_g000051.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 290aa    MW: 33022.7 Da    PI: 4.8888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000386.1_g000051.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Rmu_ssc0000386.1_g000051.1 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                79******************************99************97 PP
2Myb_DNA-binding53.94.2e-1770111447
                                 S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Rmu_ssc0000386.1_g000051.1  70 LSEHEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                                 5899***************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEHEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPLTHKPLP NGNEIENQSQ QKQHIQNDQE QQQQEEEQSC TATDDTFEID QINEGGKVED  180
KVEFVTMDHD DHELLNGFCI DEVPLIEPHE IHLVPNCAPS SSTSSSSSCS NSSSNFLEDL  240
QYLPDFGWPN CDYSSSSNNN NDIIINNDTM GLWDDDFSSW GQESWAFGVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-90MYB family protein