PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000368.1_g000039.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 337aa    MW: 37818.4 Da    PI: 5.7525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000368.1_g000039.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-1694142153
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                                 ++ykGVr++k +g +vAeIrd +     r +r +lg++ taeeAa a+ + r ++
  Rmu_ssc0000368.1_g000039.1  94 TKYKGVRRRK-WGTYVAEIRDpF-----RkTRLWLGTYTTAEEAAMAYQKKRVEF 142
                                 69*****998.**********77.....45******************9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MKQPSKDQNT SSTKRIRIIY DDPYATDCSS EDDEEYNIKK SRSVRNKHIV SEILVGGTPC  60
ESSAKTSFNC NTYGTKFGTS MDFDDSKETR RCATKYKGVR RRKWGTYVAE IRDPFRKTRL  120
WLGTYTTAEE AAMAYQKKRV EFDNIKLLQK TKSNLEKLQL SDKAKGMCET KHNYQGNHLS  180
ESQDLSADAA IETVSYEDTK SVFSHPSPSS VLDISTTAAQ NIGLRKSDEE STLEVSGREG  240
PVPLDSEEEQ YNLKAPEKPT LLPPVHLNIG FVDNYMLECL DRYFDGMTDI VDHPACDDVN  300
GLFLPAVVRP MLDSFEASKQ VPQPALSDVV AGMTGKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103KGVRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.17e-19ERF family protein