PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000355.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 697aa MW: 76769.4 Da PI: 6.3657

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000355.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.4	1.7e-15	143	189	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Rmu_ssc0000355.1_g000007.1 143 VHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 189 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MADLYGTPPD SEEISNILSH LLHGGSSSSS CGAPFKPATY MHLLNSSSSS VPPPPPHEHP 60 QLLARSADRP DSDRPSDFNF SDSGGGYFMD SDANTSKKGG RRVSSENDLG DVSCDSEGPE 120 APEVPLNAAP PRSLSKRSRA AEVHNLSEKR RRSKINEKMK ALQNLIPNSN KTDKASMLDE 180 AIEYLKQLQL QVQMLTMRNG LGLHPMCLPG MMQPVQLPHM ALGFDEGSNK VPKSSRGMSP 240 FFGSEENSMQ SAYNISSGCT ILNQPMVVPS AANVPTLEAS FVFEPSTQAY YRPFFAATSS 300 KELLFCEGEP SSKSDSNRTG INSSSDADKV SSKRPDQTIP IRELEDATNG FADENVIGEG 360 GYGIVYRGVL EDNSMVAVKN LLNNKGVLED NSMVAVKNLL NNKGQAEKEF KVEVEAIGRV 420 RHKNLVRLLG YCAEGAHRML VYEYVDNGNL EQWLHGDVGP LSPLTWENRM NIILGTAKGL 480 TYLHEGLEPK VVHRDIKSSN ILLDKQWNSK VSDFGLAKLL GSERSYVTTR VMGTFGYVAP 540 EYASTGMLNE RSDVYSFGIL IMEIISGRNP VDYSRPAGEV NLVEWLKTMV TNRTAEGVLD 600 PRLPEKPSSR ALKRALLVAL RCVDPNAQKR PKMGHVVHML EADEFPFRDD RRPGREYGRS 660 PRDAAKRVME SGDSSGYDSG AQTNMSAWRK QEVEEER

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MADLYGTPPD SEEISNILSH LLHGGSSSSS CGAPFKPATY MHLLNSSSSS VPPPPPHEHP  60
QLLARSADRP DSDRPSDFNF SDSGGGYFMD SDANTSKKGG RRVSSENDLG DVSCDSEGPE  120
APEVPLNAAP PRSLSKRSRA AEVHNLSEKR RRSKINEKMK ALQNLIPNSN KTDKASMLDE  180
AIEYLKQLQL QVQMLTMRNG LGLHPMCLPG MMQPVQLPHM ALGFDEGSNK VPKSSRGMSP  240
FFGSEENSMQ SAYNISSGCT ILNQPMVVPS AANVPTLEAS FVFEPSTQAY YRPFFAATSS  300
KELLFCEGEP SSKSDSNRTG INSSSDADKV SSKRPDQTIP IRELEDATNG FADENVIGEG  360
GYGIVYRGVL EDNSMVAVKN LLNNKGVLED NSMVAVKNLL NNKGQAEKEF KVEVEAIGRV  420
RHKNLVRLLG YCAEGAHRML VYEYVDNGNL EQWLHGDVGP LSPLTWENRM NIILGTAKGL  480
TYLHEGLEPK VVHRDIKSSN ILLDKQWNSK VSDFGLAKLL GSERSYVTTR VMGTFGYVAP  540
EYASTGMLNE RSDVYSFGIL IMEIISGRNP VDYSRPAGEV NLVEWLKTMV TNRTAEGVLD  600
PRLPEKPSSR ALKRALLVAL RCVDPNAQKR PKMGHVVHML EADEFPFRDD RRPGREYGRS  660
PRDAAKRVME SGDSSGYDSG AQTNMSAWRK QEVEEER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-41	bHLH family protein