PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000196.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 262aa    MW: 29802.3 Da    PI: 5.3783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000196.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Rmu_ssc0000196.1_g000010.1 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL 61
                                799*****************99************************97 PP
2Myb_DNA-binding56.85.2e-1867111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg+ T eE+e++++++++lG++ W++Ia+ ++ gRt++++k++w++ 
  Rmu_ssc0000196.1_g000010.1  67 RGNYTSEEEEIIIRLHEKLGNK-WSAIAAQLQ-GRTDNEVKNHWHTN 111
                                 899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MVRTPCCDER GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWLNY  60
LRPNIKRGNY TSEEEEIIIR LHEKLGNKWS AIAAQLQGRT DNEVKNHWHT NLKKRLMMNK  120
HRASSVSITH DDHHEEVVPK SSDQPKTTAP ADFANAETTV DQIPQIDYLD YPELWSPQPS  180
SSEVSSMTSD TAVAITAADG LVVEDNATSA AMGTIYGDFG DNFWTEPFLA DNSYNTSGFY  240
TPLMEPEFLY PPFDGDFLYG AT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-60MYB family protein