PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000196.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 299aa    MW: 33856.3 Da    PI: 6.703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000196.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.4e-131461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd++l  +++ +G  +W+  ++  g  R++k+c++rw +yl
  Rmu_ssc0000196.1_g000009.1 14 KGAWSAEEDDKLRTYIQSYGHWNWRQLPKFAGIQRCGKSCRLRWKNYL 61
                                79******************99**********66************97 PP
2Myb_DNA-binding55.91e-1768112248
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 g  T+eE+ l++++++qlG++ W+ Ia++++ gRt++++k++w++++
  Rmu_ssc0000196.1_g000009.1  68 GDYTEEEEALIIKLHEQLGNK-WSMIAAKLP-GRTDNEIKNHWHTHM 112
                                 568******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MVRAPFYDKS GVKKGAWSAE EDDKLRTYIQ SYGHWNWRQL PKFAGIQRCG KSCRLRWKNY  60
LQPGVKHGDY TEEEEALIIK LHEQLGNKWS MIAAKLPGRT DNEIKNHWHT HMKKKKKRTK  120
EQQNQTSSGQ VVLLKDHQQS SDDHEYSSSN SDNQLGAHES ATHNCNHANS LQLLHYPQIL  180
ESSPVVSRES TFSSSTSSAK YFSSSSSSSS SSSPNNHEAR GSTVIMNYLG DQDIVMVSSS  240
ETMILDQEYS AGDFWTKPFL QDNTCIESDT ISSSSSYLLS YDEGMDLFYQ VMPTPQEGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-45MYB family protein