PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000192.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23974.9 Da PI: 7.0903 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.5 | 5.6e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kR+ngi+KKA+E+ vLCda+v++ii +s+gk+ ey Rmu_ssc0000192.1_g000004.1 9 KRIENSTNRQVTFAKRKNGIIKKAKEITVLCDAKVSLIINASSGKMVEYN 58 79***********************************************6 PP | |||||||
2 | K-box | 83.3 | 5.5e-28 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 y++++gk+l++ak+e+l++el+++kke++ +q ++Rhl+Ged++sL++ eL Le++Le++l+++R kK++++ +q + + Rmu_ssc0000192.1_g000004.1 72 YHSQTGKKLWDAKHENLSNELDRIKKENDGMQVQLRHLKGEDITSLNHSELGDLEEALENGLTSVRGKKSDVVQMQRDSHKAA 154 78899999*************************************************************************** PP K-box 84 ekelqeenkaLrkkl 98 e+e+++ n +L+k+ Rmu_ssc0000192.1_g000004.1 155 EEEHDRLNYELHKQT 169 ************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MGRGKIEIKR IENSTNRQVT FAKRKNGIIK KAKEITVLCD AKVSLIINAS SGKMVEYNSG 60 SPETLLEILD RYHSQTGKKL WDAKHENLSN ELDRIKKEND GMQVQLRHLK GEDITSLNHS 120 ELGDLEEALE NGLTSVRGKK SDVVQMQRDS HKAAEEEHDR LNYELHKQTV KSEENLRDME 180 YHQRMSQMSF FRVQPIQPNL HDDHDRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 4e-74 | MIKC_MADS family protein |