PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000160.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 327aa    MW: 37492 Da    PI: 10.0263
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000160.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.6e-28107157151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                 krien +nrqvt+skRrng++KKA+EL vLCda+v+++++ss+gkl+e++s
  Rmu_ssc0000160.1_g000004.1 107 KRIENVTNRQVTYSKRRNGLFKKANELTVLCDAKVSLLMVSSSGKLHEFIS 157
                                 79***********************************************86 PP
2K-box81.42.1e-27169263195
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 yqk  g +l+++++e++q++l+kLk+ +++L+r++ h++Ge+L++L + eL++Le+++e++++ +R++K +l+ +qi++ +kk
  Rmu_ssc0000160.1_g000004.1 169 YQKLLGIDLWKSHYETMQENLNKLKEINKSLRRQISHRVGECLNDLRFAELHSLEKEMESAVEVVRNRKLKLISNQIDTKRKK 251
                                 78889999*************************************************************************** PP

                       K-box  84 ekelqeenkaLr 95 
                                  +++ e n++L 
  Rmu_ssc0000160.1_g000004.1 252 IRNATECNRRLY 263
                                 ********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MEETKTNLTG LSSIFESLRL PVTSKRKRGL FSRSESVVIV VYIGPPRTSK CEPRKGKERK  60
GKESKTDISP RLASTSICEW PIHKPLPFLI GLESKLKKMA RGKIQIKRIE NVTNRQVTYS  120
KRRNGLFKKA NELTVLCDAK VSLLMVSSSG KLHEFISPST TTKQVYDDYQ KLLGIDLWKS  180
HYETMQENLN KLKEINKSLR RQISHRVGEC LNDLRFAELH SLEKEMESAV EVVRNRKLKL  240
ISNQIDTKRK KIRNATECNR RLYEYDAMEE PHYGLVDDGG DYYDSAVIGY SANEDPHNVF  300
PFRLQPSHHP NLHHGGGSSD LTTYSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-73MIKC_MADS family protein