PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000150.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 737aa    MW: 80794 Da    PI: 5.6123
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000150.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.31.2e-993767362374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 v++L+++Ae +++g+  laq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+ s    + ++aa+k f
  Rmu_ssc0000150.1_g000020.1 376 VDQLVNAAELIETGNPLLAQGILARLNQQLSPIGKPFQRAAFYFKEALELLLNM--NNSHSSANLSPFS---LIYKIAAYKSF 453
                                 789*************************************************98..3344445555555...99********* PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLa 166
                                 se+sP+l+f+++t+NqaIle+veg +rvH+iDfdi++G+QW++++q+ a R+ ++ppsl+iT+++ ++ +++ el  t+e+L+
  Rmu_ssc0000150.1_g000020.1 454 SEISPVLQFANFTCNQAILESVEGFNRVHVIDFDIGYGGQWASFMQEVALRNgGSPPSLKITAFVCSSMHDEFELAFTQENLK 536
                                 ****************************************************66688*********9999************* PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                 +fA el++ fe +++  ++l++   + L ++  E +aV + l + ++l++++sl+     vL++vk+lsPk+vv  e+ +d++
  Rmu_ssc0000150.1_g000020.1 537 NFACELNLAFELEIVSIEALNS-GSWPLPLHGSEGVAVAVNLPIASFLNSHLSLPL----VLRFVKQLSPKIVVSLERGSDRT 614
                                 **************75555444.589999999999999999999****99999999....*********************** PP

                        GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                 + +F +++++a+++ys+l++sl+a   ++ ++ +k+Er ll+++i+++v+  + +   +++   +Wr  + ++GF+p+++s++
  Rmu_ssc0000150.1_g000020.1 615 DIPFPHQIIQAVHCYSSLLESLDAV-NANLDALQKIERYLLQPSIEKIVMGCHLS--PKRTPTPSWRTLFLSSGFSPLTFSNF 694
                                 **********************887.5666999****************977776..5677799******************* PP

                        GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++qa++l++++++ g++ve+++ slvl+W+++ L+s+S Wr
  Rmu_ssc0000150.1_g000020.1 695 TESQADCLVQRTPVGGFHVEKRQSSLVLCWQRKDLISASGWR 736
                                 *****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    
MPLPFEEFQG KGVLDFSSDS SDLLASPAPQ GHHQQPQKWK ENCYVGSTEP TSVLDTRRSP  60
SPPTSSSTLS SSHGSGGGSG STDTTPASGV AAAAPAENKP SQAGLEEAKC GPPLGMEDWE  120
SVLSESPGQE QSILRLMMSD IEDPSLGLNK LLQSGVGSHQ DFGFHDVVED QGYGAFEEHN  180
TGSLNLGMSS IANPSLQATS CSEIPFNGSN ATVFSASANN LFPGSLPPGL FQQQQQLVEP  240
LDEKPQIFNP HMVMNQNQAQ FNQNPAMFMP LSYSQLQDHH FLSPPPAKRH NSGGFGPSYP  300
GQRLPFLNPG QELMARVQQQ QQQQQQQHQQ QQQQLPLLPQ HLQHRPVMLA AKDKMVNNLE  360
GDKELMNNHQ LHQAIVDQLV NAAELIETGN PLLAQGILAR LNQQLSPIGK PFQRAAFYFK  420
EALELLLNMN NSHSSANLSP FSLIYKIAAY KSFSEISPVL QFANFTCNQA ILESVEGFNR  480
VHVIDFDIGY GGQWASFMQE VALRNGGSPP SLKITAFVCS SMHDEFELAF TQENLKNFAC  540
ELNLAFELEI VSIEALNSGS WPLPLHGSEG VAVAVNLPIA SFLNSHLSLP LVLRFVKQLS  600
PKIVVSLERG SDRTDIPFPH QIIQAVHCYS SLLESLDAVN ANLDALQKIE RYLLQPSIEK  660
IVMGCHLSPK RTPTPSWRTL FLSSGFSPLT FSNFTESQAD CLVQRTPVGG FHVEKRQSSL  720
VLCWQRKDLI SASGWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-150GRAS family protein