PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000119.1_g000035.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 266aa    MW: 28906.2 Da    PI: 5.2918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000119.1_g000035.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11156203455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Rmu_ssc0000119.1_g000035.1 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203
                                 8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDPPLINEAS FSAANLAAYS LAEIWPFGGE PGRLGLRMGS LGGGLGESSG NRDGSLEEST  60
VTEQSGGGGG RKRKDVSSED ESSKMVSTSS ANGLKNSSGK RMKLEGSRNE NGNSKAEVET  120
SSGADDKPEE QSTKPSEPAK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP  180
GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS LKLESVNSRV NMNPTIEAFP SKDTQPGQST  240
QLIDIPQELR PENARIPRCY ILVEEM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-74bHLH family protein