PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000116.1_g000060.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 276aa    MW: 31286 Da    PI: 9.4028
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000116.1_g000060.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-3052102151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                 k+ien++ rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  Rmu_ssc0000116.1_g000060.1  52 KKIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQNGRLYEFSS 102
                                 68***********************************************96 PP
2K-box68.42.4e-23125213997
                       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                   e+ +++l++e+a + k+ie L+ +qR+llG dL+ +s +eL+q+ +qLe+sl  +R++K +l++eqie+l+ k + l een
  Rmu_ssc0000116.1_g000060.1 125 EVEQCMQQLKHESADMAKKIEILEASQRRLLGHDLDYCSAQELNQISSQLERSLCIVRERKAQLFMEQIERLKAKGRLLLEEN 207
                                 5677799**************************************************************************** PP

                       K-box  92 kaLrkk 97 
                                  +L+++
  Rmu_ssc0000116.1_g000060.1 208 IKLHTE 213
                                 ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MEAGIDEYGN KGVLLLGFIS EIWVLITPKF DTFLGDWVLT IQEMVRGKIQ MKKIENTTSR  60
QVTFSKRRNG LLKKAYELSV LCDAEVAVII FSQNGRLYEF SSSDMQKTIN QYHKHAKGVQ  120
TNTIEVEQCM QQLKHESADM AKKIEILEAS QRRLLGHDLD YCSAQELNQI SSQLERSLCI  180
VRERKAQLFM EQIERLKAKG RLLLEENIKL HTECGARRWT GLKARNGRGS NLSNETNMLQ  240
TLKKSSRSNL MLRLLASEEA ADGAGSNPTG KVLAFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.36e-75MIKC_MADS family protein