PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000116.1_g000059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25720.4 Da PI: 9.9388 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv fskRrng+lKKA+ELSvLCdaevavi+fs++++lye+ss Rmu_ssc0000116.1_g000059.1 9 KRIENATSRQVAFSKRRNGLLKKAFELSVLCDAEVAVIVFSQKNRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 74 | 4.3e-25 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ e+ +++l++e+a + k+ie+L+ +qR+llG dL+++s +e +q+ +qLe+sl+k+R++K++ll+eqie+l+ ke+ l Rmu_ssc0000116.1_g000059.1 79 NTTEVEQYMQQLKHESADMAKKIETLEASQRRLLGHDLDPCSAQEVNQMSSQLERSLRKVRERKDQLLTEQIERLKAKERFLL 161 445678889************************************************************************** PP K-box 89 eenkaLrkkl 98 een +L+++ Rmu_ssc0000116.1_g000059.1 162 EENAKLHTQC 171 ******9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MVRGKIEVKR IENATSRQVA FSKRRNGLLK KAFELSVLCD AEVAVIVFSQ KNRLYEFSSS 60 DMQKTIKKYQ KHAKGALTNT TEVEQYMQQL KHESADMAKK IETLEASQRR LLGHDLDPCS 120 AQEVNQMSSQ LERSLRKVRE RKDQLLTEQI ERLKAKERFL LEENAKLHTQ CGARPCQKPL 180 VQEKGVGAAS YNWMNSSQSS GSQTINNSDQ VETRLFIGPP VMRCE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 143 | RKVRERKD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-76 | MIKC_MADS family protein |