PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000097.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 1096aa MW: 123288 Da PI: 9.3553 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G + Wk++a+ + +R+ +++ Rmu_ssc0000097.1_g000002.1 46 QWTTEELKHFYEGYRKYGRD-WKKVASVVR-HRSVENV 81 6*****************77.*********.9998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1096 aa Download sequence |
MAPVRKTKGV NKRFPYINEV ASSKYGDNAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR 60 KYGRDWKKVA SVVRHRSVEN VEALYTMNRA YLSLPEGTAS VIGLTAMMCD YYSMLERSDS 120 EQESIDDAGT SRKPRKLARG KLRNDASKGL EGHIPDISHS RSIASDGCLS LLKNRRTGIR 180 PHAVKKRTPR VPVSSYDKDN SKKYFSPARQ GIKTSTDGSD VNMAQELAFS LTEPSHKGSS 240 PQVSRTPKSR AKGSTPSPVQ NGKRMFAETD MKIGRPRGGE MDGIGCELSL GSMQADYDME 300 RYYLKRQKRE ESENNHLEDV KESSSGTEEE QYKISAVKGK LGTRVVGAKN ASSFHKDRKK 360 TKTANVGRDE DSSFDALLTL ADLSLRMPEA TAEMESSAPV EEENFNIAKN SKLKGNPSVT 420 MVEEDTALKT SHLGKLKEGV PQSTTGIQKR KQKSPVKLQI NENEAQTEFP WKDNQMIEST 480 DEVNYVNKVK RSSHYDTHQK QGKLVKPLEN SSSTTDRERQ ENNSGLSTVQ VQYANQANLT 540 LRDKSRRKDI QKDAKSLQST SYDQPNKLVL SVPKNELNLK GRLSNCLSRY QARRWCAFEW 600 FYSAIDFPWF AKREFVEYLN HVGLGHVPRL TRVEWGVIRS SLGRPRRFSD QFLKEEKEKL 660 HQYRESVRKH YAELNAGTRD GLPTDLARPL SVGQHVIAFH PRSREIHNGI VLSVDHSRYR 720 VQFDQSELGV ADIMDIDCMP LNPLDNVPAS FTRQNIIVNK YTENFREIKI NEQQKEGKTE 780 GYMKAVSTGN LNSTAVPCHI LPTTPQTNKS SKHIEMQAKE ADVRALFELT RALDKKDAVV 840 SELRRMNDEV FEKCRDGDDS IKNSEPFKKE YAAVLLQLSE INDQVSSALF CLRQRNTYRG 900 SYPLISANPL SGFSDSSGHS SSLCHVQEPA THVYEIVESS RAKAKEMVHV AMQAISSLKR 960 ENNIERIQEV IDFVSQQLSE DDAGRLSMGS STPAAPILVS EDQSTACTEK PDPKSNSLSN 1020 QSEDQLLSDL IANCVAALFM IQTCTARQFS PADVAWVLDR AVTSLKPICT QNLPVYGEIQ 1080 KCMGIVRSQI LALVPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | MYB_related family protein |