PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000092.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 491aa MW: 55670.8 Da PI: 6.1688 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 211 | 257 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Rmu_ssc0000092.1_g000001.1 211 KGQWTIDEDRVLIQLVAQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 257 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 263 | 305 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Rmu_ssc0000092.1_g000001.1 263 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 305 679*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence |
MEINKLRENL ASQIPLLVPE NNSYMMKPHN MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ 60 YANGSSSNPM FGVQNPCFEP YYNDNNAYTC DQGSPTDVNF YECKPLNIAD NLGHGQVLDN 120 FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP LTNSQDIKPM SFVAPDEVSC INSENGYYKR 180 AGINHKGTSR LSTIARAGST FKGRKKNNVV KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM 240 LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE DKILIQAHAE IGNKWAEIAK RLPGRTENSI 300 KNHWNATKRR QYSKRKCRSK YPRGSLLQDY IKSLNLDASP NTGRQRKNNN NSSNSSPADH 360 NNASTASTKV QSQINVGFNS ESDSRLVPNY EFSEEDPDFC FDENMFQEGC SIDSLLDDIP 420 CATDFGENGN DFDGKMMVSS DHEPFSVHDE KNFEVLAMQV DLGSAVMEST EVKKELDLVE 480 MMSQVNEADD A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-105 | MYB family protein |