PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000063.1_g000009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ARR-B | ||||||||
Protein Properties | Length: 582aa MW: 64654 Da PI: 6.5395 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.2 | 1.6e-27 | 312 | 366 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++ Rmu_ssc0000063.1_g000009.1 312 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKTEGLTRHNVASHLQKYRMH 366 5689*****************.********************************96 PP | |||||||
2 | Myb_DNA-binding | 43.7 | 6.3e-14 | 315 | 364 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ Rmu_ssc0000063.1_g000009.1 315 VDWTPELHKKFVHAVEQLGVDqaIPSRILELMKtEGLTRHNVASHLQKYR 364 57***********************************************7 PP | |||||||
3 | Response_reg | 31.4 | 9.9e-12 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEEST CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtah 80 vl+ d++ + +r+ le +y +v+++ + +eal + + +++ ++ ++ ++ G+++l++ ++lpii+ + Rmu_ssc0000063.1_g000009.1 20 VLLLDEDTSSSAEIRSKLEAMDY-IVTTFCNETEALSAFSSNPesFHVSIVEVNTSKgDWGFQFLENA----KDLPIIMTSNI 97 7999999****************.***************777777************899****9754....46889999888 PP TTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 81 geeedalealkaGakdflsKpfdpeelvk 109 +++ +++ +Ga +fl Kp +++l++ Rmu_ssc0000063.1_g000009.1 98 HCLNTMMKCIALGAVEFLRKPLGEDKLRN 126 88***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence |
MVCTASDLEG WKDFPKGLRV LLLDEDTSSS AEIRSKLEAM DYIVTTFCNE TEALSAFSSN 60 PESFHVSIVE VNTSKGDWGF QFLENAKDLP IIMTSNIHCL NTMMKCIALG AVEFLRKPLG 120 EDKLRNIWQH VVHKAFNAGG KTVSESVKPV KESVVPMLQP KLENEPPKCK ISVVTENTSR 180 VLEHDHEQST GSDKYPAPST PQIKQGSRLL DDGDCQDQTN CLSEKESGEH DGESKSVETT 240 CGNANDTLQI SEPQMPEKIV VKQEKDSADV SKSDINLSQP HIIDGTNDTG RATENLSKAS 300 GLNHSYKSGR KKMKVDWTPE LHKKFVHAVE QLGVDQAIPS RILELMKTEG LTRHNVASHL 360 QKYRMHKRHI LPKDEDRRLL HPRDPNQMSY YPHKPIMAFP PYHYNSAVSM PPVYPMWGQP 420 ASHPANIQMW GSPSYPPWQV SESWHWNPSY PGLHADAWGC PVMPQPLQGG YSSYPQIASG 480 VNNTNVVDNG CSMPHNSSKH HPIASGLNNT NVVDNGCSMP HDSSELYPAE EIIDKVVKEA 540 MSKPWLPLPL GLKLPSTEGV LAELSRQGIC NIPPRINGST SR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.3 | 1e-140 | ARR-B family protein |