PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000062.1_g000042.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 573aa    MW: 63816.8 Da    PI: 6.465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000062.1_g000042.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.41e-1332035721373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA a+s++++   ++l+++ +  +s +g+pmqRl ay++e+L ar   s+s++y+al+++e +   s++ l+++++
  Rmu_ssc0000062.1_g000042.1 203 LRQLLIACAVALSDNNMDGFEKLIEKARGAVSISGEPMQRLGAYMVEGLVARKEASGSNIYRALRCREPE---SDDLLSYMHI 282
                                 689******************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++e++P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++g+r
  Rmu_ssc0000062.1_g000042.1 283 LYEICPYLKFGYMAANGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVGRR 365
                                 *******************************************************************999999********** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+ + e++++p+ef+  v     d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe++
  Rmu_ssc0000062.1_g000042.1 366 LKAISEKFNIPVEFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESN 447
                                 ****************.688899************************************************************ PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++Fl+rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls
  Rmu_ssc0000062.1_g000042.1 448 TNTTPFLNRFIETLDYYLAMFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLS 530
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 +++++ +++llr ++ + y++ee++g+++lgWk+r+Lvs+SaW
  Rmu_ssc0000062.1_g000042.1 531 SYVNSVIRSLLRCYS-EHYKLEEKDGAMLLGWKERNLVSASAW 572
                                 ***********9999.66************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MDSRQRFGFS ETGAGYFGGS HPTAPNRLLG SLKLDIGNSP NSHFSTHFDS DTVTTLSDCQ  60
EQLSSTENLS GVSHSSNSPF ETNSYISRLS LSPSVDCRRD SLQLSSGRAS LLQDANCSPN  120
IKYALQELES ALMGPDEEEV TATNIFGETS RRKGQRSLSW NQERAGAHVM QRQTSFASGH  180
RQSEKRHKVL DEASPQGFPA DNLRQLLIAC AVALSDNNMD GFEKLIEKAR GAVSISGEPM  240
QRLGAYMVEG LVARKEASGS NIYRALRCRE PESDDLLSYM HILYEICPYL KFGYMAANGA  300
IADACRNEDR IHIIDFQIAQ GTQWVTLLQA LAARPSGAPH VRITGIDDPV SKYARGDGLE  360
AVGRRLKAIS EKFNIPVEFH GVPVFAPDVT PDMLDVRPGE ALAVNFPLQL HHTPDESVDV  420
NNPRDGLLRI VKSLSPKVTT LVEQESNTNT TPFLNRFIET LDYYLAMFES IDVTLPRNSK  480
ERINVEQHCL ARDIVNVIAC EGKERVERHE LFGKWKSRLT MAGFRQYPLS SYVNSVIRSL  540
LRCYSEHYKL EEKDGAMLLG WKERNLVSAS AWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein