PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000062.1_g000022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 101aa MW: 12027.8 Da PI: 9.658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.4 | 7.4e-16 | 21 | 98 | 52 | 127 |
NAM 52 kaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + +++ew++Fs++d k+++++ + at++g+Wk t k+ ++ ++ +++++ k++L+fy g+ ++g++t+ +hey Rmu_ssc0000062.1_g000022.1 21 RLDDEEWFYFSRSDYKSNKKQGQDNwATERGIWKITAKECDIRARgSKAVIRRKRILTFYIGKVRSGQNTSLEIHEYY 98 45789*********999987766555******************95556689999**********************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence |
MLCFVETEIM KLGVSVFSLI RLDDEEWFYF SRSDYKSNKK QGQDNWATER GIWKITAKEC 60 DIRARGSKAV IRRKRILTFY IGKVRSGQNT SLEIHEYYIY T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 9e-13 | NAC family protein |