PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000043.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 280aa    MW: 29944.8 Da    PI: 4.94
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000043.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71e-16103152155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 ++y+G+r  ++ g+Wv+eIr+p++   +kr++lg+f t+e+Aa+a++ a+++l+ 
  Rmu_ssc0000043.1_g000001.1 103 PRYRGIR--SRGGKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALALKR 152
                                 68****6..679*********843...5***********************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MADPNTPPTN LRQITIDQPT PTQFTSDFPP PPSPTLHQPL LPAPSHSLAL LPLDHPCGTP  60
IIPIISPTSE ATVVQQLQLQ TPKEATAPQG KTPMASSSSG KHPRYRGIRS RGGKWVSEIR  120
EPRKTKRIWL GTFPTPEMAA AAYDVAALAL KREDAVLNFP SFIKSYPVPA SMSALDIRAA  180
AAAAASAVGP ATLKKSGSTG TSNVGQQQKE YEDMLSINNS TLASSVGADF MDEEEIFGMP  240
NLLVDMAEGM LVSPPRINSP PSDYDSPENS EGGESLWNYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-40ERF family protein