PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000013.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 673aa MW: 77517.7 Da PI: 6.1757

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000013.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	38	82	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++ + W+tIa+ ++ gRt+ qc++r+ k+l Rmu_ssc0000013.1_g000001.1 38 VEWTREEDEKLLHLAKLMSSQ-WRTIAKNVN-GRTASQCIERYEKLL 82 68***************99.*****.*********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MKYGINEWDR ISTLLNRKSA KQCNARWFQW LEPSIKKVEW TREEDEKLLH LAKLMSSQWR 60 TIAKNVNGRT ASQCIERYEK LLDAACNDNY EDPRRLRAGE IDPNPETRPA RPDPVDMDED 120 EKEMLSEARA RLANTKGKKA KRKAREAQLE EARRIASLQK RRELKAAGID DKSTWNQQKR 180 KRNGIDYSAE IPFEKNPPLG FYNVGDEDRE VVLEQHDQFP LTIEELEGKR RVDVEAELRK 240 QDIAKNKISN KLNIDDFSNV EDVGDEDRKV VLEQHDQFPL TIEELEGKRR VDVEAELRKQ 300 DIAKNKISNK LNVDDFSNVE TVRKRSKLML PAPQISDIEL EEIAKMSNAG DLVGSENGFT 360 DATYFGVTHA TRRLGLTPSK GTVIRDELHI NEGIDKDDGA KLKQLEHSQQ FRINNLHKGL 420 SNLPKPKSEY QIVVQPVPEE NEEAGHQALV TKKRSKVLNM RADEDKHGPV AVLPSTIEQA 480 DQMIRKELLS LKEHDCAKYP IDEKVVTTFE EDELREADSM IVEEAQYPGE AHKTCSPGCC 540 LSSIAEDENP VACLRSEFEK VQNEFEKVKK KAQIIENKVK VRTDGYEKRA KDVLWPKIEE 600 TFKQMDTATK ELECFQALQK QEQLAATSRI NNMWEEVQKQ KELKKTLQKR YGDLVVKLEK 660 IQHQSKGAVP MIF

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MKYGINEWDR ISTLLNRKSA KQCNARWFQW LEPSIKKVEW TREEDEKLLH LAKLMSSQWR  60
TIAKNVNGRT ASQCIERYEK LLDAACNDNY EDPRRLRAGE IDPNPETRPA RPDPVDMDED  120
EKEMLSEARA RLANTKGKKA KRKAREAQLE EARRIASLQK RRELKAAGID DKSTWNQQKR  180
KRNGIDYSAE IPFEKNPPLG FYNVGDEDRE VVLEQHDQFP LTIEELEGKR RVDVEAELRK  240
QDIAKNKISN KLNIDDFSNV EDVGDEDRKV VLEQHDQFPL TIEELEGKRR VDVEAELRKQ  300
DIAKNKISNK LNVDDFSNVE TVRKRSKLML PAPQISDIEL EEIAKMSNAG DLVGSENGFT  360
DATYFGVTHA TRRLGLTPSK GTVIRDELHI NEGIDKDDGA KLKQLEHSQQ FRINNLHKGL  420
SNLPKPKSEY QIVVQPVPEE NEEAGHQALV TKKRSKVLNM RADEDKHGPV AVLPSTIEQA  480
DQMIRKELLS LKEHDCAKYP IDEKVVTTFE EDELREADSM IVEEAQYPGE AHKTCSPGCC  540
LSSIAEDENP VACLRSEFEK VQNEFEKVKK KAQIIENKVK VRTDGYEKRA KDVLWPKIEE  600
TFKQMDTATK ELECFQALQK QEQLAATSRI NNMWEEVQKQ KELKKTLQKR YGDLVVKLEK  660
IQHQSKGAVP MIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	182	KRRELKAAGIDDKSTWNQQKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-167	MYB family protein