PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0042359.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 96aa MW: 11021.7 Da PI: 9.3041 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.8e-11 | 19 | 69 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + kGV+++k + +Wv eIr+ + r +l++f ae Aa a++ a +l+++ Rmu_sc0042359.1_g000001.1 19 KLKGVCQRK-WDKWVLEIRVlG-----TqDRLWLNSFSNAEAAAVARDVAYYCLRKH 69 679*****9.**********66.....45*************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence |
MSYSSEDNSS PMTARNGRKL KGVCQRKWDK WVLEIRVLGT QDRLWLNSFS NAEAAAVARD 60 VAYYCLRKHW TLESLNFPTN LPCSVNQAAD MLLRLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 4e-19 | ERF family protein |