PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0041549.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 173aa MW: 20454.3 Da PI: 9.9327 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.9 | 2.1e-32 | 7 | 157 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvka..eekewy 59 p+ frF+Pt el++++L+kk k+ ++ ++i+++d++k+eP++Lp + + ++ +wy Rmu_sc0041549.1_g000001.1 7 PVEFRFRPTKTELLCDHLAKKNWCKDSQIMSIIPDIDLCKHEPRELPGlaftrqenlgrklyfdfffrftraE--SwySQGKWY 88 6679**********************9**99****************558999***99999999999776431..2435669** PP NAM 60 fFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 fF++r+ ky++++r+nr+t +g Wk tgkd+++++ +++++g k++L+f k pk++kt v+hey Rmu_sc0041549.1_g000001.1 89 FFAPREYKYPNSTRSNRTTGEGSWKVTGKDRDIKAPgSEAVIGRKRILTFQKRGVPKSHKTGYVIHEYY 157 ***********************************9666779*************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MSCDHFPVEF RFRPTKTELL CDHLAKKNWC KDSQIMSIIP DIDLCKHEPR ELPGLAFTRQ 60 ENLGRKLYFD FFFRFTRAES WYSQGKWYFF APREYKYPNS TRSNRTTGEG SWKVTGKDRD 120 IKAPGSEAVI GRKRILTFQK RGVPKSHKTG YVIHEYYHIQ PHSDPPKQIG DFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 3e-29 | NAC family protein |