PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0040875.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C3H | ||||||||
Protein Properties | Length: 142aa MW: 16512 Da PI: 9.7543 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 5e-11 | 57 | 81 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f r G C yG+ C +aHg Rmu_sc0040875.1_g000001.1 57 YKTRLCNNFKR-GRCLYGEACLYAHG 81 9**********.*************8 PP | |||||||
2 | zf-CCCH | 23.5 | 9.7e-08 | 114 | 136 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ f+ G C yG++C+F H+ Rmu_sc0040875.1_g000001.1 114 RLCKLFLNEGKCTYGEKCRFRHV 136 79******************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence |
MSNLQSTCQF FTPLPREGQE FEAVSGTEPH QAFKKPRVSK VGSDSMVIER RYKWLHYKTR 60 LCNNFKRGRC LYGEACLYAH GIEEIRNTLG SSANEKGMLG RTEFARHRTC DELRLCKLFL 120 NEGKCTYGEK CRFRHVIPKS IR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 6e-09 | C3H family protein |