PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0039000.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | CPP | ||||||||
Protein Properties | Length: 229aa MW: 24809.1 Da PI: 8.2747 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.1 | 1.3e-16 | 45 | 83 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC C+ks ClkkYCeCf+a++ Cse+CkC dCkN Rmu_sc0039000.1_g000001.1 45 KHHKGCACRKSGCLKKYCECFQANVLCSENCKCMDCKNF 83 589***********************************5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MFGHLVGTDA VGAILERNPK AFRPKIASSP HESRDSWEDA GEVQKHHKGC ACRKSGCLKK 60 YCECFQANVL CSENCKCMDC KNFDGSEERR AIFHEDHNTI ANMQQANAAI SGAIGSSGFG 120 PLVSRQRPSD ELFSGIARDQ SVHRITQAQQ ENHLRPPMAS SSLLSVPTFG TPNAAVSGSS 180 KPTYRSMLAN IIQPENIKDL CSRLVVVSGE AAKALAGLVI YRPPSFFSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 2e-60 | CPP family protein |