PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0035188.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 748aa MW: 86233.9 Da PI: 7.9457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0035188.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	36	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r+ tr++Cka+++v ++ gk++vt +++ Rmu_sc0035188.1_g000002.1 36 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVVRRAtIGKYVVTIFDEG 112 ***********99998887..9************998888.....999*******99888889******* PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0035188.1_g000002.1 113 HSHPLT 118 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
LQQSFDDTAI YCPQVKVDLI PVKNQEFHTL EDVETFYKSY AKESGFDVKS FTSEKKNGVI 60 VRKAYVCSKQ GTSKVTGKKR NRNRTRVNCK ARIVVVRRAT IGKYVVTIFD EGHSHPLTTP 120 RRKHLTKIHR EVSSIHKSLT KQLTAVNVPT CTQFDFLGVH SGGVENIGCL QQDIYNYKRD 180 CRKEVKGHDG DMLHEYFLLE KEKDPSLIFK IEADNENRIT HIFWADAISR RSYKFYGDVV 240 IFDTTYNTNM YSLIFAPLVG VNNHGQTIIL ACAFLSNETT DSFVWFFKEF LDAMPGDAPR 300 MIITDQDPAM TKAISEVLPQ TFHRYCSWHI LNKFSEKIDP GKYTRYYDEF QDCIWNSENR 360 DEFDARWTSI VVSSGLGDNG WLKTMYDIRS TWVPAYVNHI FSAGMSSSQR AESGHAFYKR 420 FVSKENTLLD FMVQFNRAVT RQRHMELMED HVDINEKPNF HSPFEMADQM ARVYTHECFK 480 QFYDQLSQCC NYRFELSHEN DTYMVYIALR KKMENPKGRE IIYAKESDFV SCSCKKFETV 540 GIPCRHILAF LIFIRLVDRL PDQYILKRWT KSRKAETVLD DVGVEITDNG DLLARRSRLC 600 QYAVDVIDKI MGSEEASDLF VDSLKSVLEM YNSMMADGET VKSAIVPAEQ KSLPSQHIYN 660 EPIQVRAKGC GKRLKAGKEK GRLKAAKKAN GKGRFCHGCK KNDQQHDKRN CPELKNKNDI 720 SIPQTGEDTS DPSTDEEEYS NTGVDEFA

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

LQQSFDDTAI YCPQVKVDLI PVKNQEFHTL EDVETFYKSY AKESGFDVKS FTSEKKNGVI  60
VRKAYVCSKQ GTSKVTGKKR NRNRTRVNCK ARIVVVRRAT IGKYVVTIFD EGHSHPLTTP  120
RRKHLTKIHR EVSSIHKSLT KQLTAVNVPT CTQFDFLGVH SGGVENIGCL QQDIYNYKRD  180
CRKEVKGHDG DMLHEYFLLE KEKDPSLIFK IEADNENRIT HIFWADAISR RSYKFYGDVV  240
IFDTTYNTNM YSLIFAPLVG VNNHGQTIIL ACAFLSNETT DSFVWFFKEF LDAMPGDAPR  300
MIITDQDPAM TKAISEVLPQ TFHRYCSWHI LNKFSEKIDP GKYTRYYDEF QDCIWNSENR  360
DEFDARWTSI VVSSGLGDNG WLKTMYDIRS TWVPAYVNHI FSAGMSSSQR AESGHAFYKR  420
FVSKENTLLD FMVQFNRAVT RQRHMELMED HVDINEKPNF HSPFEMADQM ARVYTHECFK  480
QFYDQLSQCC NYRFELSHEN DTYMVYIALR KKMENPKGRE IIYAKESDFV SCSCKKFETV  540
GIPCRHILAF LIFIRLVDRL PDQYILKRWT KSRKAETVLD DVGVEITDNG DLLARRSRLC  600
QYAVDVIDKI MGSEEASDLF VDSLKSVLEM YNSMMADGET VKSAIVPAEQ KSLPSQHIYN  660
EPIQVRAKGC GKRLKAGKEK GRLKAAKKAN GKGRFCHGCK KNDQQHDKRN CPELKNKNDI  720
SIPQTGEDTS DPSTDEEEYS NTGVDEFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	84	KRNRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein