PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0034080.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 16825.2 Da PI: 11.017 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.4e-19 | 15 | 63 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd + + r +lg+f+taeeAa+a++aa++ ++g Rmu_sc0034080.1_g000001.1 15 FRGVRKRP-WGRYAAEIRDpW-----TkSRKWLGTFDTAEEAARAYDAAARGFRG 63 8*******.**********88.....44**********************87765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 152 aa Download sequence |
GGGGRRSRSS KEGSFRGVRK RPWGRYAAEI RDPWTKSRKW LGTFDTAEEA ARAYDAAARG 60 FRGVRAKTNF ENPAPPKKHA LVIGGKEVLW TPPVRKNDSV PAPAAPVRSE YKGYKLENLG 120 PVVSEQEKKM KLAAESGKKP FQFDLNLPAP SF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 5 | 22 | RRSRSSKEGSFRGVRKRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-18 | ERF family protein |