PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0027086.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22855 Da PI: 8.9452 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd+ll ++++++G g W++I++ g++R++k+c++rw++yl Rmu_sc0027086.1_g000003.1 5 PWTKEEDQLLRKCIEKYGEGKWHRIPHLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE el++++ ++lG++ W+++a++++ gRt++++k++w+ + Rmu_sc0027086.1_g000003.1 56 RGSFEQEEVELIIQLQRLLGNR-WSLVAARLP-GRTGNDVKNYWNCH 100 899*******************.*********.***********977 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MGGIPWTKEE DQLLRKCIEK YGEGKWHRIP HLAGLNRCRK SCRLRWLNYL RPNIKRGSFE 60 QEEVELIIQL QRLLGNRWSL VAARLPGRTG NDVKNYWNCH LSKKLNAQET HGDHQKINHA 120 GNNNLQVIRP QASKYASSNS KRSMISSTLE DQTCQALEEC SNASVAMLCN IDKDQGQISQ 180 IVEREDSNNP ICSVFVLVSV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 2e-47 | MYB family protein |