PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0026307.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | E2F/DP | ||||||||
Protein Properties | Length: 168aa MW: 19194 Da PI: 11.5996 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 41.9 | 1.7e-13 | 110 | 168 | 2 | 51 |
E2F_TDP 2 keksLrlltqkflkllek..seegivtlnevakeLvse.......dvknkrRRiYDilN 51 +eksL ll+q+f+kl+ + se++ ++l+e+ak L+ +++k+RRiYDi+N Rmu_sc0026307.1_g000001.1 110 REKSLALLAQNFVKLFVCtgSESESISLDEAAKLLLGVgdpqnvsVMRTKVRRIYDIAN 168 79************988855677************87788****999***********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
LLQFPQPLQP RRRRHSPDRP RRRRLAPRRR PPPDLRHRQR AGERRTAVKK VDFLLPGNPQ 60 TSRKSKNTYT WKGFGAVPNA LKELREEGLD LTPIPAACNN NNNPQDETKR EKSLALLAQN 120 FVKLFVCTGS ESESISLDEA AKLLLGVGDP QNVSVMRTKV RRIYDIAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 24 | RRRRHSPDRPRRRR |
2 | 12 | 25 | RRRRHSPDRPRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 1e-28 | E2F/DP family protein |