PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0025693.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26427.3 Da PI: 6.0609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 3e-17 | 91 | 140 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrdp++ng +r++lg++ ae+A a+++a+ k++g Rmu_sc0025693.1_g000001.1 91 FRGVRRRP-WGKYAAEIRDPKKNG--TRVWLGTYERAEDAGLAYDRAAFKMRG 140 89******.***********9998..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MSTETESFSN SNRALLESIR QHLLDDDFEF DTQSAFFANS PAQSTSSSSR IEISSNDLEI 60 VEEPNQVFTC KLEVEVAERE HNTPSRERQN FRGVRRRPWG KYAAEIRDPK KNGTRVWLGT 120 YERAEDAGLA YDRAAFKMRG SKAKLNFPHL IGTHDMEVGR VLPKRASPEL SSPSSVDGSP 180 KPKRRRSGVD STAAKAKLGE AAQEFHVFQM DSFTFGDEDM VLLSPSECSD IRSFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-44 | ERF family protein |