PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0025325.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 919aa MW: 104329 Da PI: 9.385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0025325.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5.2e-10	293	338	2	46
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 g+WTt+Ed+ ++ +v++ g +W+ Ia+ +g++Rt+ qc r+q Rmu_sc0025325.1_g000009.1 293 GPWTTDEDKTILYLVQKKNGVnDWNNIAEAVGTNRTPFQCLARYQR 338 89***********8765436********************96 PP
2	Myb_DNA-binding	45.9	1.3e-14	347	390	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l+ av+ +G g+W ++a+ ++ gRt+ qc +rw k Rmu_sc0025325.1_g000009.1 347 REWTKDEDAKLASAVEAFGEGNWQSVASALN-GRTGTQCSNRWKK 390 68***************************.*********98 PP
3	Myb_DNA-binding	43.2	9.3e-14	400	443	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Rmu_sc0025325.1_g000009.1 400 GKWTPEEDKRLIVAQMLFGSKSWNKTAQFVP-GRTQAQCRDRYVN 443 79***************************.*********77 PP
4	Myb_DNA-binding	47.8	3.3e-15	452	495	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l+ a++++G W+++a++++ +Rt+++c rw + Rmu_sc0025325.1_g000009.1 452 GEWTEEEDSRLIAAIEEYGHC-WSKVAACVP-HRTDNMCWRRWKVL 495 78***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
MLIVYDPDTH EKSAEQIDPS CKSVEETCNE VSGTDAHERF LTLVTDNEEG QPSTSVEWVQ 60 SDSCEPTLLP TKSSAFPKSA LAFLDAINKN RSCQKFLRSK LIQIQAKIEE NNKLKQRVKI 120 LRDFQAHCKR RTGEALSQKK DPRVQLILTK KPRADSKAHD RAISAMSYGP EENSHVANYR 180 KASTKFPLSL DRKNWSEVEK KDLQNGIRQQ FQEMVLQSSV DDSSYSETPD GDSNDIDKIL 240 ASIKDLEITP YSIREFLPKV NWEQLASMYV PGRSGGECEA RWLNWEDPLI SHGPWTTDED 300 KTILYLVQKK NGVNDWNNIA EAVGTNRTPF QCLARYQRSL NASILKREWT KDEDAKLASA 360 VEAFGEGNWQ SVASALNGRT GTQCSNRWKK SLHPTRTRAG KWTPEEDKRL IVAQMLFGSK 420 SWNKTAQFVP GRTQAQCRDR YVNSLEPSLR CGEWTEEEDS RLIAAIEEYG HCWSKVAACV 480 PHRTDNMCWR RWKVLFPDEV PLLREEKRIR KTALIRNFVD REKERPALGP NDFLLQDVTS 540 MKTLTYPRKT GGLSQVPKKI KPRRHRNDAQ LCSEEEPGTS NSEVETYDGE DASKKKKKKK 600 VLKQRQRRHK DNEPTGDCAA VVPVPKKIRP RRNRNNGQIP GISNSEVRTC DGDDGPKKKK 660 VLKQRHRRHK GTELTGECTA IVPVSNEDDA HKEPTEMSCS DALKKKKVLK HRHRKHRGTE 720 PTGECKAIVP GSNEDDARKE PTAMSYSDQI IGTSDEDDTV SYYLHKSRKR KLEADLAVQE 780 SPFYCIRDRE ALMQHEPAIA CNKPGRRKLV RGQKLGLQEP MRGVLRICPG SDHETGDPVV 840 ASTGKKNSKK RHAQTTKRHV ICNDHDAGDL PKQEEVTIKS GKEQVSAGAD SGDDITLACF 900 LNRLKKRRES GRGDIQMPR

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

MLIVYDPDTH EKSAEQIDPS CKSVEETCNE VSGTDAHERF LTLVTDNEEG QPSTSVEWVQ  60
SDSCEPTLLP TKSSAFPKSA LAFLDAINKN RSCQKFLRSK LIQIQAKIEE NNKLKQRVKI  120
LRDFQAHCKR RTGEALSQKK DPRVQLILTK KPRADSKAHD RAISAMSYGP EENSHVANYR  180
KASTKFPLSL DRKNWSEVEK KDLQNGIRQQ FQEMVLQSSV DDSSYSETPD GDSNDIDKIL  240
ASIKDLEITP YSIREFLPKV NWEQLASMYV PGRSGGECEA RWLNWEDPLI SHGPWTTDED  300
KTILYLVQKK NGVNDWNNIA EAVGTNRTPF QCLARYQRSL NASILKREWT KDEDAKLASA  360
VEAFGEGNWQ SVASALNGRT GTQCSNRWKK SLHPTRTRAG KWTPEEDKRL IVAQMLFGSK  420
SWNKTAQFVP GRTQAQCRDR YVNSLEPSLR CGEWTEEEDS RLIAAIEEYG HCWSKVAACV  480
PHRTDNMCWR RWKVLFPDEV PLLREEKRIR KTALIRNFVD REKERPALGP NDFLLQDVTS  540
MKTLTYPRKT GGLSQVPKKI KPRRHRNDAQ LCSEEEPGTS NSEVETYDGE DASKKKKKKK  600
VLKQRQRRHK DNEPTGDCAA VVPVPKKIRP RRNRNNGQIP GISNSEVRTC DGDDGPKKKK  660
VLKQRHRRHK GTELTGECTA IVPVSNEDDA HKEPTEMSCS DALKKKKVLK HRHRKHRGTE  720
PTGECKAIVP GSNEDDARKE PTAMSYSDQI IGTSDEDDTV SYYLHKSRKR KLEADLAVQE  780
SPFYCIRDRE ALMQHEPAIA CNKPGRRKLV RGQKLGLQEP MRGVLRICPG SDHETGDPVV  840
ASTGKKNSKK RHAQTTKRHV ICNDHDAGDL PKQEEVTIKS GKEQVSAGAD SGDDITLACF  900
LNRLKKRRES GRGDIQMPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	594	600	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-175	MYB family protein