PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0022408.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 765aa MW: 87065.4 Da PI: 6.5107

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0022408.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.3e-31	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r+ tr+gCka+++vkk+++g+w v+kl++eH Rmu_sc0022408.1_g000011.1 83 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDGGEN--RSKRQRTITRVGCKAQMTVKKQSSGRWAVSKLVKEH 164 9***************************************9988..999***************************** PP FAR1 86 nHelap 91 nH+l+p Rmu_sc0022408.1_g000011.1 165 NHDLVP 170 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence
MDYKPLTIGN DVVEFDLGGS GEDDTIALDL EHPDDGYDLF EEDDLVRLAS SSTRFGDDLG 60 NGDPNLEPYE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG 120 FRRDGGENRS KRQRTITRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHDLVP PDKVHCLRSH 180 RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGINNVGF TKVDCQNYMS SSRQRTLGSG 240 GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN 300 RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI 360 IRAAVVQVFP GTRHRFCKWN VFREAQEKLS HIYQSHPTFE AEFLRCINMT ETIDEFEICW 420 ESLLKMYDLD SNEWLQSMYH ARQQWVPVFL RDTFFGEMFV TQGSDNINSY FDGYINASTN 480 IQVLIKQYEK AIATRHEKEV KADYDTLNIS PILRTPSPME KQAAKLYTRI IFMKFQEELV 540 ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE ISGIICRHIL 600 AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DEHALGLPND SQDSSAARYD NLRREAIKYV 660 EEGAESECVY NVAMDALREA ANKVAAAKKH GPGVVQHTPK NCSQQLVSCT VDQDKKIEEL 720 AAELEIAIQR CEAYQAKLLT ILKDMEEQKL KISVNVRNVR LNLKM

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence

MDYKPLTIGN DVVEFDLGGS GEDDTIALDL EHPDDGYDLF EEDDLVRLAS SSTRFGDDLG  60
NGDPNLEPYE GMEFDSEQAS RIFYNSYARR VGFSTRVSVY QRSRRDGSII CRQIVCSREG  120
FRRDGGENRS KRQRTITRVG CKAQMTVKKQ SSGRWAVSKL VKEHNHDLVP PDKVHCLRSH  180
RHVSGPARSL IDTLQAAGMG PSGVMSVLIK ESGGINNVGF TKVDCQNYMS SSRQRTLGSG  240
GQLVFDYLKR MQDEDPGFFC AVQGDFENST GNIFWADSNS RMNYSYFGDT VTFDTTYRTN  300
RYRVPFAPFT GWNHHGQPVL FGCALLLNES ESSFVWLFQT WLAAMSGCQP VSITTDQDRI  360
IRAAVVQVFP GTRHRFCKWN VFREAQEKLS HIYQSHPTFE AEFLRCINMT ETIDEFEICW  420
ESLLKMYDLD SNEWLQSMYH ARQQWVPVFL RDTFFGEMFV TQGSDNINSY FDGYINASTN  480
IQVLIKQYEK AIATRHEKEV KADYDTLNIS PILRTPSPME KQAAKLYTRI IFMKFQEELV  540
ETLAYPATVV DDTGSETMFR VAKFGEDHKG HFVKFNVFEK KASCSCQMFE ISGIICRHIL  600
AVFRVTNVLT LPSHYILKRW TRNAKSGVLL DEHALGLPND SQDSSAARYD NLRREAIKYV  660
EEGAESECVY NVAMDALREA ANKVAAAKKH GPGVVQHTPK NCSQQLVSCT VDQDKKIEEL  720
AAELEIAIQR CEAYQAKLLT ILKDMEEQKL KISVNVRNVR LNLKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein