PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0021954.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29472.4 Da PI: 4.9584 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + + r++lg+f++ae Aa a+++a+ +++g Rmu_sc0021954.1_g000001.1 121 SYRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFAMRG 171 69*******.**********422...25*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MGYWDNNHIM SSHSITNTFQ TENSNISDFQ MNYSIFHSPN SDTSSEFSWD ALEFGNTSLP 60 FNENDSEEML LFGMLSKATQ ETTSFETHNS AASSNPIKEE EVSSDSTSEE ENPKTPKKEK 120 SYRGVRRRPW GKFAAEIRDS TRHGVRVWLG TFDSAEAAAL AYDQAAFAMR GSAAVLNFPV 180 ERVRESLRDM NCATSDLDGG CSPVVALKRK HSMRRKLGNK KSRMERDVRL ENVVVFEDLG 240 ADYLEQLLSS SESTSTTTAA ANW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-61 | ERF family protein |