PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0020930.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 127aa MW: 14599.2 Da PI: 7.5775 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.6 | 2.7e-12 | 31 | 107 | 2 | 79 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+ l L++ ++ +e + r++ + ++W+ v++++ + g+ rs q + kwe l +yk i +++++ s s + Rmu_sc0020930.1_g000001.1 31 WTETDLLILVNEVTAVEADCRKEFSSFQKWKIVAQNCTALGVPRSLDQYRRKWEALLHDYKIIDHWNSQS-GASASYW 107 ********************************************************************85.4444445 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MKGEQTLPEF HHSNGGGSGS RRTRSQVAPD WTETDLLILV NEVTAVEADC RKEFSSFQKW 60 KIVAQNCTAL GVPRSLDQYR RKWEALLHDY KIIDHWNSQS GASASYWALE SDRRKQFGLP 120 QSFDREL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 3e-36 | Trihelix family protein |