PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0019167.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 750aa MW: 86468.1 Da PI: 7.8493

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0019167.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	38	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fY++YAke GF+v+ +s+k+ ng i+++ +vCsk+g+++ + kk r+r+ tr++Cka+++v ++ gk++vt +++ Rmu_sc0019167.1_g000001.1 38 FYKSYAKESGFDVKSFTSEKK--NGVIVRKAYVCSKQGTSKVTGKK-----RNRNRTRVNCKARIVVVRRAtIGKYVVTIFDEG 114 ***********99998887..9************998888.....999*******99888889******* PP FAR1 85 HnHela 90 H+H+l+ Rmu_sc0019167.1_g000001.1 115 HSHPLT 120 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG 60 VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVVRR ATIGKYVVTI FDEGHSHPLT 120 TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK 180 RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD 240 VVIFDTTYNT NMYSLIFAPL VGVNNHGQTI ILACAFLSNE TTDSFVWFFK EFLDAMPGDA 300 PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYD EFQDCIWNSE 360 NRDEFDARWT SIVVSSGLGD NGWLKTMYDI RSTWVPAYVN HIFSAGMSSS QRAESGHAFY 420 KRFVSKENTL LDFMVQFNRA VTRQRHMELM EDHVDINEKP NFHSPFEMAD QMARVYTHEC 480 FKQFYDQLSQ CCNYRFELSH ENDTYMVYIA LRKKMENPKG REIIYAKESD FVSCSCKKFE 540 TVGIPCRHIL AFLIFIRLVD RLPDQYILKR WTKSRKAETV LDDVGVEITD NGDLLARRSR 600 LCQYAVDVID KIMGSEEASD LFVDSLKSVL EMYNSMMADG ETVKSAIVPA EQKSLPSQHI 660 YNEPIQVRAK GCGKRLKAGK EKGRLKAAKK ANGKGRFCHG CKKNDQQHDK RNCPELKNKN 720 DISIPQTGED TSDPSTDEEE YSNTGVDEFA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MESQQSFDDT AIYCPQVKVD LIPVKNQEFH TLEDVETFYK SYAKESGFDV KSFTSEKKNG  60
VIVRKAYVCS KQGTSKVTGK KRNRNRTRVN CKARIVVVRR ATIGKYVVTI FDEGHSHPLT  120
TPRRKHLTKI HREVSSIHKS LTKQLTAVNV PTCTQFDFLG VHSGGVENIG CLQQDIYNYK  180
RDCRKEVKGH DGDMLHEYFL LEKEKDPSLI FKIEADNENR ITHIFWADAI SRRSYKFYGD  240
VVIFDTTYNT NMYSLIFAPL VGVNNHGQTI ILACAFLSNE TTDSFVWFFK EFLDAMPGDA  300
PRMIITDQDP AMTKAISEVL PQTFHRYCSW HILNKFSEKI DPGKYTRYYD EFQDCIWNSE  360
NRDEFDARWT SIVVSSGLGD NGWLKTMYDI RSTWVPAYVN HIFSAGMSSS QRAESGHAFY  420
KRFVSKENTL LDFMVQFNRA VTRQRHMELM EDHVDINEKP NFHSPFEMAD QMARVYTHEC  480
FKQFYDQLSQ CCNYRFELSH ENDTYMVYIA LRKKMENPKG REIIYAKESD FVSCSCKKFE  540
TVGIPCRHIL AFLIFIRLVD RLPDQYILKR WTKSRKAETV LDDVGVEITD NGDLLARRSR  600
LCQYAVDVID KIMGSEEASD LFVDSLKSVL EMYNSMMADG ETVKSAIVPA EQKSLPSQHI  660
YNEPIQVRAK GCGKRLKAGK EKGRLKAAKK ANGKGRFCHG CKKNDQQHDK RNCPELKNKN  720
DISIPQTGED TSDPSTDEEE YSNTGVDEFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	86	KRNRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein