PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0018500.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-X1

Protein Properties

Length: 852aa MW: 95932.8 Da PI: 7.8091

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0018500.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	23.6	1.1e-07	710	728	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+ +CHeGpCppC+ Rmu_sc0018500.1_g000001.1 710 CGVHRCSDICHEGPCPPCR 728 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MSKQPKQTYR VCFCFRRRFR LAVSEAPPEI KTLFDQHSEN GVMTVDHFHR FLTEVQKEDL 60 TKEEAQVLLD QSLNDFKHLN IFHRKILNLE AFFKFLFSDN NPPINNNKVH HDMNAPLSHY 120 YIHTGHNSYL TGNQLSSDCS DVPIKEALLR GVRVIELDIW PNSKKDDVDV LHGGTLTAPV 180 PLIKCFQCIK EHAFVKSEYP VVITLEDHLT PDLQAKVAGM ITQTFGEVLF YPPGSECLKD 240 FPSPESLKRR IIISTKPPSE YLEAKAAAEK AAAKAAAAGN DLKRGASLAP DEEAWGSEVP 300 DQKGAVAEDD KNELDENNSN EEEDVEESKC PQNEAPEYKR LIAIHAGKPK GGLVECLKVD 360 PNKVRRLSLS EQQLEKASVT YGKEIVRFTQ RNILRVYPKG IRVDSSNYNP MIGWSHGAQM 420 VAFNMQGYGR SLWVMQGMFR ANGGCGYVKK PDFLLTTGPN NEVFDPQHKS SVKKTLKVKV 480 YMGEGWYYDF KHTHFDAYSP PDFYARVGIA GVAADTQMKK TKTLEDDWIP AWDESFEFPL 540 TCPELAVIRI EVHEYDMSEK DDFGGQTSLP LSELKKGIRA ASDLSALRAS TRLPISQSKA 600 AEVSLWNCPK CRVEYTQSQI PKIYRCFCGK LENPPSDDPW ILPHSCGEVC NRPLKHNCGH 660 HCLLLCHPGP CPSCPKLVKA RCFCGSVQDM RRCGFKNFSC NNACEKKLAC GVHRCSDICH 720 EGPCPPCRVR GRYRCQCGKR EEEKECCERL DFRCEENCER MLGCGQHKCS KGCHSGECGP 780 CPFQGKRTCP CGKRVHEGLS CKDAVPLCGA TCDKMLSCGY HRCPERCHRG QCLETCRTVV 840 TKRCRCGGLK KE

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MSKQPKQTYR VCFCFRRRFR LAVSEAPPEI KTLFDQHSEN GVMTVDHFHR FLTEVQKEDL  60
TKEEAQVLLD QSLNDFKHLN IFHRKILNLE AFFKFLFSDN NPPINNNKVH HDMNAPLSHY  120
YIHTGHNSYL TGNQLSSDCS DVPIKEALLR GVRVIELDIW PNSKKDDVDV LHGGTLTAPV  180
PLIKCFQCIK EHAFVKSEYP VVITLEDHLT PDLQAKVAGM ITQTFGEVLF YPPGSECLKD  240
FPSPESLKRR IIISTKPPSE YLEAKAAAEK AAAKAAAAGN DLKRGASLAP DEEAWGSEVP  300
DQKGAVAEDD KNELDENNSN EEEDVEESKC PQNEAPEYKR LIAIHAGKPK GGLVECLKVD  360
PNKVRRLSLS EQQLEKASVT YGKEIVRFTQ RNILRVYPKG IRVDSSNYNP MIGWSHGAQM  420
VAFNMQGYGR SLWVMQGMFR ANGGCGYVKK PDFLLTTGPN NEVFDPQHKS SVKKTLKVKV  480
YMGEGWYYDF KHTHFDAYSP PDFYARVGIA GVAADTQMKK TKTLEDDWIP AWDESFEFPL  540
TCPELAVIRI EVHEYDMSEK DDFGGQTSLP LSELKKGIRA ASDLSALRAS TRLPISQSKA  600
AEVSLWNCPK CRVEYTQSQI PKIYRCFCGK LENPPSDDPW ILPHSCGEVC NRPLKHNCGH  660
HCLLLCHPGP CPSCPKLVKA RCFCGSVQDM RRCGFKNFSC NNACEKKLAC GVHRCSDICH  720
EGPCPPCRVR GRYRCQCGKR EEEKECCERL DFRCEENCER MLGCGQHKCS KGCHSGECGP  780
CPFQGKRTCP CGKRVHEGLS CKDAVPLCGA TCDKMLSCGY HRCPERCHRG QCLETCRTVV  840
TKRCRCGGLK KE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	2e-92	NF-X1 family protein