PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0017668.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20434.8 Da PI: 9.1791 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 105 | 156 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GVr+++ g+W+AeIrdp+ r +r++lg+f t+eeAa+a++ a+++++g+ Rmu_sc0017668.1_g000003.1 105 SEYRGVRQRP-GGKWAAEIRDPR----RaARVWLGTFQTEEEAARAYDTAALEFRGA 156 569*******.9*********82....48*************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MGSHSGALPK EQEHAIIVSA LKQVVRGGVR TNNAPSRPHQ PPPPQRIYYA SSSLPPTEGA 60 DQVVIPYSDS DTCPVCKMET DDCLGCGLFP PSEQYKGKGK KMKTSEYRGV RQRPGGKWAA 120 EIRDPRRAAR VWLGTFQTEE EAARAYDTAA LEFRGADRAK LNFPPSSDTG GTTSRALTDE 180 TKSPGSRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 8e-28 | ERF family protein |