PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0017334.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 450aa    MW: 50828.3 Da    PI: 6.109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0017334.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS464.65.7e-142254471374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl+cA+ v++g+le+a+ +L+++s las+dgd+mqR+aayfteALa r+++ +++lykal +++ s  ++see+ ++k+f
  Rmu_sc0017334.1_g000002.1  25 LIHLLLTCANYVAAGNLENANIALEQISLLASSDGDTMQRIAAYFTEALADRILKAWPGLYKALYSTRIS--SVSEEFLVRKVF 106
                                689*************************************************************887776..59********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                +e+ P+lk++++++NqaI ea+e+e++vHiiD++ s+++QW+aLl+aL++Rpegpp+lRiTgv++    +ke l ++++ L++ 
  Rmu_sc0017334.1_g000002.1 107 FEMLPFLKVAYVLTNQAIIEAMEEEKMVHIIDLNSSEPAQWIALLHALSARPEGPPHLRITGVHQ----QKEVLDQMAHSLTEE 186
                                *****************************************************************....9************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................................... 214
                                Ae+l+ pf+fn+ v+++le+l++e+L+vk+gEala+++vlq h+ll                                      
  Rmu_sc0017334.1_g000002.1 187 AERLDTPFQFNP-VVSKLETLDFEKLHVKTGEALAISSVLQFHSLLssdddfhrkkfslesknrnrvhspgvlqmaqgtlgell 269
                                ************.799******************************************************************** PP

                       GRAS 215 ...................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                                                    ++v +  + d++L+++++l Pk++vv+eq+++hn+++++er++eal+ y+alfd+le++++r+s
  Rmu_sc0017334.1_g000002.1 270 ekdmgkgyspspdstssspLSPVGSV-KMDSFLNAFWGLTPKIMVVTEQDSNHNGSTLMERLFEALYSYAALFDCLESTMSRTS 352
                                ************99876553333333.4899***************************************************** PP

                       GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                                 er+kvE++l+g+ei+n++aceg+er+erhe+lekW +rl+ aGF++vpls++ + qa+ ll+ ++ dgyr+ ee+g++++ W+
  Rmu_sc0017334.1_g000002.1 353 LERMKVEKMLFGEEIKNIIACEGSERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLQARKLLQGYGCDGYRIREENGCVLMSWQ 436
                                ************************************************************************************ PP

                       GRAS 364 drpLvsvSaWr 374
                                drpL+svSaWr
  Rmu_sc0017334.1_g000002.1 437 DRPLFSVSAWR 447
                                **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MTSPSLGSPY PWQRELKSEE RGLCLIHLLL TCANYVAAGN LENANIALEQ ISLLASSDGD  60
TMQRIAAYFT EALADRILKA WPGLYKALYS TRISSVSEEF LVRKVFFEML PFLKVAYVLT  120
NQAIIEAMEE EKMVHIIDLN SSEPAQWIAL LHALSARPEG PPHLRITGVH QQKEVLDQMA  180
HSLTEEAERL DTPFQFNPVV SKLETLDFEK LHVKTGEALA ISSVLQFHSL LSSDDDFHRK  240
KFSLESKNRN RVHSPGVLQM AQGTLGELLE KDMGKGYSPS PDSTSSSPLS PVGSVKMDSF  300
LNAFWGLTPK IMVVTEQDSN HNGSTLMERL FEALYSYAAL FDCLESTMSR TSLERMKVEK  360
MLFGEEIKNI IACEGSERKE RHEKLEKWIQ RLDLAGFGNV PLSYYGMLQA RKLLQGYGCD  420
GYRIREENGC VLMSWQDRPL FSVSAWRCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein