PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0017289.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 826aa MW: 95065.3 Da PI: 6.7486

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0017289.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.5	9.7e-28	67	154	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +e Rmu_sc0017289.1_g000001.1 67 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---SSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKE 147 5**************************************999888...77888899********************** PP FAR1 85 HnHelap 91 HnHel p Rmu_sc0017289.1_g000001.1 148 HNHELLP 154 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MLVDGQDNMN DGRVNENMNM VPLVEEAQNS GGGIIGSPKR DVQVFEGDAD FEPCNGIEFD 60 SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES DSGSSRRPTV 120 KKTDCKASMH VKRRADGKWI IHEFIKEHNH ELLPALAYHF RIHRNVKLAE KNNMDILQAV 180 SERTRKMYVE MSRQSGGYQY TGFLRTDTKY QFDKCLHLGL DEGDAQVMLE YFKRIQKDNP 240 NFFYAIDLNE EQRVRNLFWV DAKSRSDYKS FNDVVSFDTS YIKINEKLPF APFVGVNHHF 300 QPMLLGCALI SDDSKATFLW LLTTWVRAMG GLHPKVIISD QDDNLKAAIE EVFQDARHCF 360 SLWNILEKIP EVLAPVIKQH ENFLPKFHKC IFKSWTEEHF DMRWWKMVTR FELQDDVLIR 420 SLYDDRKRWV PSYLGDTFLA GMCTTQRSES MNSFFDKFIH KKITLKEFVK QYGTILQNRY 480 DEEAIADFDT WHKQPALKSP SPWEKQMSTV YTHAVFRKFQ VEVLGVVGCQ PKKEHEDGST 540 ATFRVQDCEK EEYFMVTWTE TKSEVSCSCR MFEYKGFLCR HSLIVLQICG LSSIPLHYIL 600 KRWTKDAKSS QSILEGSELV RTRVQRYNDL CKRAIELSEE GSLSEETYNI AFRTLVEALK 660 NCVNVNNSNA TVVDLSSSVH GIREAEEENQ GSLTAKPSRK RNTNRKRKVQ AEQDVILGEA 720 QDSLQQMENL SSDGMALSGY YGAQHGLVQL NLMEPPHDSY YVNQESMQGL GQLNSIAPSD 780 DGFFGTQQIH GLGQLDFRPS SSFSYSLQDE PHLRSAELHG SSSRHS

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MLVDGQDNMN DGRVNENMNM VPLVEEAQNS GGGIIGSPKR DVQVFEGDAD FEPCNGIEFD  60
SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES DSGSSRRPTV  120
KKTDCKASMH VKRRADGKWI IHEFIKEHNH ELLPALAYHF RIHRNVKLAE KNNMDILQAV  180
SERTRKMYVE MSRQSGGYQY TGFLRTDTKY QFDKCLHLGL DEGDAQVMLE YFKRIQKDNP  240
NFFYAIDLNE EQRVRNLFWV DAKSRSDYKS FNDVVSFDTS YIKINEKLPF APFVGVNHHF  300
QPMLLGCALI SDDSKATFLW LLTTWVRAMG GLHPKVIISD QDDNLKAAIE EVFQDARHCF  360
SLWNILEKIP EVLAPVIKQH ENFLPKFHKC IFKSWTEEHF DMRWWKMVTR FELQDDVLIR  420
SLYDDRKRWV PSYLGDTFLA GMCTTQRSES MNSFFDKFIH KKITLKEFVK QYGTILQNRY  480
DEEAIADFDT WHKQPALKSP SPWEKQMSTV YTHAVFRKFQ VEVLGVVGCQ PKKEHEDGST  540
ATFRVQDCEK EEYFMVTWTE TKSEVSCSCR MFEYKGFLCR HSLIVLQICG LSSIPLHYIL  600
KRWTKDAKSS QSILEGSELV RTRVQRYNDL CKRAIELSEE GSLSEETYNI AFRTLVEALK  660
NCVNVNNSNA TVVDLSSSVH GIREAEEENQ GSLTAKPSRK RNTNRKRKVQ AEQDVILGEA  720
QDSLQQMENL SSDGMALSGY YGAQHGLVQL NLMEPPHDSY YVNQESMQGL GQLNSIAPSD  780
DGFFGTQQIH GLGQLDFRPS SSFSYSLQDE PHLRSAELHG SSSRHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein