PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0016972.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34602.7 Da PI: 6.7755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ G g+W++I++ g+ R++k+c++rw +yl Rmu_sc0016972.1_g000001.1 17 RGLWSPEEDEKLMNHIHNSGHGSWSSIPKIAGLERCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2.1e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +++d+++ G++ W+ Ia+ m+ gRt++++k++w++ Rmu_sc0016972.1_g000001.1 70 RGSFSEQEERIIIDVHRVVGNR-WAQIAKQMP-GRTDNEVKNFWNS 113 899*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MSINTGHNCC SKQKVKRGLW SPEEDEKLMN HIHNSGHGSW SSIPKIAGLE RCGKSCRLRW 60 INYLRPDLKR GSFSEQEERI IIDVHRVVGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI 120 SQGLDPNTHN LIIPAASDSK SSHDSSSLHG SSSSTIPTYL YQSPNMVWTD HFQEQYPRGS 180 QPSMEKSKVQ TISSFSHHSY PSELDIIIEN CKTWGTGSSI ESTTAEPAEM EYMSMKAEQK 240 EESCEVQTEN GSCSVLNYNG RQTSMDASSF GSCNLSNFDF VESTLVPCEM DYHLRPIMDQ 300 LGCYRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-77 | MYB family protein |