PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0016727.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 304aa    MW: 35098.4 Da    PI: 7.1012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0016727.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.19.8e-25101451128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkr 73 
                                l pG rF P ++el+ +yLk+ v+gk+++  +  + ++d+y   ePw++ +     +  a    ++k++yfF++++kk+++++r
  Rmu_sc0016727.1_g000004.1  10 LLPGQRFVPMEDELLLCYLKPMVHGKQVPGRDLvVFDCDLYGDqEPWEIWEtyksrR--AndlrKNKDLYFFAQQKKKTPKDSR 91 
                                579************************99988769999*996549****74244431..1445466799*************** PP

                        NAM  74 knr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  r + + g+Wk+   +k +  ++++++g kkt+ + ++ +p+  +  W+mhe++l
  Rmu_sc0016727.1_g000004.1  92 VGRtVGRGGTWKEESGKKVISPETNRVIGYKKTFGYKNQGSPH--EGCWIMHEFEL 145
                                ***666799****999999999999***********9655555..89*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MDNGGPDDHL LPGQRFVPME DELLLCYLKP MVHGKQVPGR DLVVFDCDLY GDQEPWEIWE  60
TYKSRRANDL RKNKDLYFFA QQKKKTPKDS RVGRTVGRGG TWKEESGKKV ISPETNRVIG  120
YKKTFGYKNQ GSPHEGCWIM HEFELDPSQL IHKKQETNYV LCVLRKKKEP EINKRKRREQ  180
MPGYNSDLDD GTNLISKQPK QESLVSSTSN APPPPIGLGA EQGERDQCLQ TPYINNPNAQ  240
TVPLPYTFPS EENRGAQQFA AEEQYWRQQF VVPSGDDQKR NFSEWEEKLW QQMVADLGTT  300
PHPQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.18e-14NAC family protein