PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016635.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 433aa MW: 48804.3 Da PI: 9.3116

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016635.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.5e-16	80	139	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Rmu_sc0016635.1_g000002.1 80 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 139 789****************988855556447***********************98 PP
2	AP2	54.6	2.7e-17	182	233	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa a++ a+ +++g Rmu_sc0016635.1_g000002.1 182 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 233 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MDQLASSVKS ELVTSPSKRP ICMIEVDALV NKCVKRRRRD SSTAVSPTGH NADQQQQTQP 60 NHPSSTTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY 120 DEEESAARAY DLAALKYWGT STFTNFPVSD YENEIDLMNT LTKEEYLASL RRRSSGFSRG 180 VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF 240 DLSTYIRWLR PGPSSLAANS QEQAKPNIAD SNSNNPSKEE RPMSIFNPNN SFAVEDIDTT 300 RTRGIFQRQN TMPPISPTCT PKSSNSPTAL SLLLKSSIFK ELVEKNLNDE TEESDDEKSD 360 IIKNLLPQTN GTENLKRILY EGIHNIPFSC SSNRDMLPAL ESREKNMLPL CNSRGQSLWN 420 NGAINMFSSA DFS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MDQLASSVKS ELVTSPSKRP ICMIEVDALV NKCVKRRRRD SSTAVSPTGH NADQQQQTQP  60
NHPSSTTTTT TTTTTVKRSS RFRGVSRHRW TGRYEAHLWD KGSWNPTQRK KGKQVYLGAY  120
DEEESAARAY DLAALKYWGT STFTNFPVSD YENEIDLMNT LTKEEYLASL RRRSSGFSRG  180
VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYGTQEEA AHAYDIAAIE YRGINAVTNF  240
DLSTYIRWLR PGPSSLAANS QEQAKPNIAD SNSNNPSKEE RPMSIFNPNN SFAVEDIDTT  300
RTRGIFQRQN TMPPISPTCT PKSSNSPTAL SLLLKSSIFK ELVEKNLNDE TEESDDEKSD  360
IIKNLLPQTN GTENLKRILY EGIHNIPFSC SSNRDMLPAL ESREKNMLPL CNSRGQSLWN  420
NGAINMFSSA DFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	114	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	9e-79	AP2 family protein