PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016065.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 460aa MW: 51036.3 Da PI: 7.7889

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016065.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Rmu_sc0016065.1_g000002.1 14 RGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	25.8	2.5e-08	164	190	17	45
HHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwq 45 + +G W+ Ia++++ gRt++++k++w+ Rmu_sc0016065.1_g000002.1 164 RTFGAV-WAQIAKHLP-GRTDNEVKNFWN 190 556655.*******.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SSQEAALIIQ LHSILGNSGD IDVSVAFWRR RRRWSCQTGP RASQTASPWR 120 SRSKVLGSDL TQTSSQRVHK QEEGQASMSG KPSAPERCRS IDVRTFGAVW AQIAKHLPGR 180 TDNEVKNFWN SSIKKKLIPH DVIPALASFS HFLNPSNAGS DQESFFTTLI ANPNFGLQQE 240 QPYLPFPTPL PPSSFYHGDH SILKLDYTNY SSNRLHFPTP IQLPSNYSSL YDSSWSLGYQ 300 PHLFDSNHQQ DQILNNIEVA PHFNIGNELM VPSVASLPGY DHENLSVVPT MPQSCEINID 360 GSACRAMPFD PPDNHLPQEL DSLAKVSSCF GPFGDHGSYN PFDLQLPSNQ VELVDPVISS 420 LPTLAQPSPS SASSSLLPLP SSQLFITNRN VLSSLGSLAS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SSQEAALIIQ LHSILGNSGD IDVSVAFWRR RRRWSCQTGP RASQTASPWR  120
SRSKVLGSDL TQTSSQRVHK QEEGQASMSG KPSAPERCRS IDVRTFGAVW AQIAKHLPGR  180
TDNEVKNFWN SSIKKKLIPH DVIPALASFS HFLNPSNAGS DQESFFTTLI ANPNFGLQQE  240
QPYLPFPTPL PPSSFYHGDH SILKLDYTNY SSNRLHFPTP IQLPSNYSSL YDSSWSLGYQ  300
PHLFDSNHQQ DQILNNIEVA PHFNIGNELM VPSVASLPGY DHENLSVVPT MPQSCEINID  360
GSACRAMPFD PPDNHLPQEL DSLAKVSSCF GPFGDHGSYN PFDLQLPSNQ VELVDPVISS  420
LPTLAQPSPS SASSSLLPLP SSQLFITNRN VLSSLGSLAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	4e-54	MYB family protein