PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0015029.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 1044aa MW: 118211 Da PI: 8.0692

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0015029.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	6.1e-10	418	463	2	46
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 g+WTt+Ed+ ++ +v++ g +W+ Ia+ +g++Rt+ qc r+q Rmu_sc0015029.1_g000002.1 418 GPWTTDEDKTILYLVQKKNGVnDWNNIAEAVGTNRTPFQCLARYQR 463 89***********8765436********************96 PP
2	Myb_DNA-binding	45.7	1.5e-14	472	515	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l+ av+ +G g+W ++a+ ++ gRt+ qc +rw k Rmu_sc0015029.1_g000002.1 472 REWTKDEDAKLASAVEAFGEGNWQSVASALN-GRTGTQCSNRWKK 515 68***************************.*********98 PP
3	Myb_DNA-binding	43	1.1e-13	525	568	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Rmu_sc0015029.1_g000002.1 525 GKWTPEEDKRLIVAQMLFGSKSWNKTAQFVP-GRTQAQCRDRYVN 568 79***************************.*********77 PP
4	Myb_DNA-binding	47.6	3.8e-15	577	620	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l+ a++++G W+++a++++ +Rt+++c rw + Rmu_sc0015029.1_g000002.1 577 GEWTEEEDSRLIAAIEEYGHC-WSKVAACVP-HRTDNMCWRRWKVL 620 78***************99.*****.*********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence
MSPLAENDEL SYYDDDDDDD DDGFNADIEA LRRACMLTGK GPDDITTKND DENPSSNQND 60 DVDLSSAPNS DSDFDEDLEL LRKIKSQFSN TSLKPLSLKP LCTLLPPSAS DEEEDDYQTL 120 LAVRKRFAAY ENDTHEKSAE QIDPSCKSVE ETCNEVSGTD AHERFLTLVT DNEVGQPSTS 180 IEWVQSDSCE PTLLPTKSSA FPKSALAFLD AINKNRSCQK FLRSKLIQIQ AKIEENNKLK 240 QRVKILRDFQ AHCKRRTGEA LSQKKDPRVQ LILTKKPRAD SKAHDRAISA MSYGPEENSH 300 VANYRKASTK FPLSLDRKNW SEVEKKDLQN GIRQQFQEMV LQSSVDDSSY SETPDGDSND 360 IDKILASIKD LEITPYSIRE FLPKVNWEQL ASMYVPGRSG GECEARWLNW EDPLISHGPW 420 TTDEDKTILY LVQKKNGVND WNNIAEAVGT NRTPFQCLAR YQRSLNASIL KREWTKDEDA 480 KLASAVEAFG EGNWQSVASA LNGRTGTQCS NRWKKSLHPT RTRAGKWTPE EDKRLIVAQM 540 LFGSKSWNKT AQFVPGRTQA QCRDRYVNSL EPSLRCGEWT EEEDSRLIAA IEEYGHCWSK 600 VAACVPHRTD NMCWRRWKVL FPDEVPLLRE EKRIRKTALI RNFVDREKER PALGPNDFLL 660 QDVTSMKTLT YPRKTGGLSQ VPKKIKPRRH RNDAQLCSEE EPGTSNSEVE TYDGEDASKK 720 KKKKKVLKQR QRRHKDNEPT GDCAAVVPVP KKIRPRRNRN NGQIPGISNS EVRTCDGDDG 780 PKKKKVLKQR HRRHKGTELT GECTAIVPVS NEDDAHKEPT EMSCSDALKK KKVLKHRHRK 840 HRGTEPTGEC KAIVPGSNED DARKEPTAMS YSDQIIGTSD EDDTVSYYLH KSRKRKLEAD 900 LAVQESPFYC IRDREALMQH EPAIACNKPG RRKLVRGQKL GLQEPMRGVL RICPGSDHET 960 GDPVVASTGK KNSKKRHAQT TKRHVICNDH DAGDLPKQEE VTIKSGKEQV SAGADSGDDI 1020 TLACFLNRLK KRRESGRGDI QMPR

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence

MSPLAENDEL SYYDDDDDDD DDGFNADIEA LRRACMLTGK GPDDITTKND DENPSSNQND  60
DVDLSSAPNS DSDFDEDLEL LRKIKSQFSN TSLKPLSLKP LCTLLPPSAS DEEEDDYQTL  120
LAVRKRFAAY ENDTHEKSAE QIDPSCKSVE ETCNEVSGTD AHERFLTLVT DNEVGQPSTS  180
IEWVQSDSCE PTLLPTKSSA FPKSALAFLD AINKNRSCQK FLRSKLIQIQ AKIEENNKLK  240
QRVKILRDFQ AHCKRRTGEA LSQKKDPRVQ LILTKKPRAD SKAHDRAISA MSYGPEENSH  300
VANYRKASTK FPLSLDRKNW SEVEKKDLQN GIRQQFQEMV LQSSVDDSSY SETPDGDSND  360
IDKILASIKD LEITPYSIRE FLPKVNWEQL ASMYVPGRSG GECEARWLNW EDPLISHGPW  420
TTDEDKTILY LVQKKNGVND WNNIAEAVGT NRTPFQCLAR YQRSLNASIL KREWTKDEDA  480
KLASAVEAFG EGNWQSVASA LNGRTGTQCS NRWKKSLHPT RTRAGKWTPE EDKRLIVAQM  540
LFGSKSWNKT AQFVPGRTQA QCRDRYVNSL EPSLRCGEWT EEEDSRLIAA IEEYGHCWSK  600
VAACVPHRTD NMCWRRWKVL FPDEVPLLRE EKRIRKTALI RNFVDREKER PALGPNDFLL  660
QDVTSMKTLT YPRKTGGLSQ VPKKIKPRRH RNDAQLCSEE EPGTSNSEVE TYDGEDASKK  720
KKKKKVLKQR QRRHKDNEPT GDCAAVVPVP KKIRPRRNRN NGQIPGISNS EVRTCDGDDG  780
PKKKKVLKQR HRRHKGTELT GECTAIVPVS NEDDAHKEPT EMSCSDALKK KKVLKHRHRK  840
HRGTEPTGEC KAIVPGSNED DARKEPTAMS YSDQIIGTSD EDDTVSYYLH KSRKRKLEAD  900
LAVQESPFYC IRDREALMQH EPAIACNKPG RRKLVRGQKL GLQEPMRGVL RICPGSDHET  960
GDPVVASTGK KNSKKRHAQT TKRHVICNDH DAGDLPKQEE VTIKSGKEQV SAGADSGDDI  1020
TLACFLNRLK KRRESGRGDI QMPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	719	725	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein