PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0014846.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GeBP | ||||||||
Protein Properties | Length: 422aa MW: 46394.1 Da PI: 4.6318 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 116.8 | 1.2e-36 | 179 | 272 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 rlw e+Dei++L+G+idfkak+g +ps+++ af+ef+k+s++++vsk+ql++K rrLKkK++++ +k ++g+ p+fsk+h+ k Rmu_sc0014846.1_g000002.1 179 GRLWGEDDEIAILKGMIDFKAKKGIDPSSNMGAFHEFLKRSLKADVSKNQLMDKTRRLKKKYHTNAEKGENGEGPVFSKAHELK 262 69********************************************************************************** PP DUF573 88 ifelskkiWg 97 +f+lskkiWg Rmu_sc0014846.1_g000002.1 263 SFDLSKKIWG 272 *********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence |
MAPKRLLQDP PAASSMEEDS DAETLDEEQE EEEEEEEQND AVQEKSDEEE EEEEEEEDDN 60 EEEENVNAKK PVVIPSSSVV PNPQSESASS EDDDAAAGSE TESDDINHSP SASDFTVKPI 120 VSKPVNDSSS AKPTKKPAPA PAKPAPGSKR PAESDPTPKD SRKKKKGANG GDDEDTKKGR 180 LWGEDDEIAI LKGMIDFKAK KGIDPSSNMG AFHEFLKRSL KADVSKNQLM DKTRRLKKKY 240 HTNAEKGENG EGPVFSKAHE LKSFDLSKKI WGAEANGGDD SAKNSRKKPR KSAKANNNNN 300 SSTVLALPVS DAAAERSVEK KVKVEEMNVA NGGVKAAESD DFWSKYPSLS DSLQLANCSS 360 RWEGLERVMI QKMPSIGSSK AKELDDRWRK LQVLEMELSV KKLDLMHEQA KLLLDGIKSR 420 KD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 323 | KKPRKSAKANNNNNSSTVLALPVSDAAAERSVEKKVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 7e-26 | GeBP family protein |